Construct: ORF ccsbBroadEn_10702

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015187.1_s300c1, BRDN0000389637
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FMNL1 (752)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 752 FMNL1 formin like 1 XM_006722070.4 41.8% 41.7% 1_1923del;3303_3304delCCinsAG
2 human 752 FMNL1 formin like 1 XM_006722066.4 41.6% 41.5% 1_1941del;3321_3322delCCinsAG
3 human 752 FMNL1 formin like 1 NM_005892.4 40.2% 39.4% (many diffs)
4 human 752 FMNL1 formin like 1 XM_011525182.3 40% 39.2% (many diffs)
5 human 752 FMNL1 formin like 1 XM_011525180.2 39.8% 37.7% (many diffs)
6 human 752 FMNL1 formin like 1 XM_006722065.4 39.3% 37.3% (many diffs)
7 human 752 FMNL1 formin like 1 XM_006722064.4 39.1% 37.1% (many diffs)
8 human 752 FMNL1 formin like 1 XM_006722063.4 39% 36.9% (many diffs)
9 human 752 FMNL1 formin like 1 XM_006722062.4 38.8% 36.8% (many diffs)
10 human 752 FMNL1 formin like 1 XM_011525179.3 38.8% 36.8% (many diffs)
11 human 752 FMNL1 formin like 1 XM_006722069.3 38.5% 38.4% 1_1941del;2908_2909ins102;3219_3220delCCinsAG
12 mouse 57778 Fmnl1 formin-like 1 XM_006533845.2 38.1% 40.2% (many diffs)
13 mouse 57778 Fmnl1 formin-like 1 XM_006533844.2 37.8% 39.8% (many diffs)
14 mouse 57778 Fmnl1 formin-like 1 NM_001077698.1 36.3% 38.3% (many diffs)
15 mouse 57778 Fmnl1 formin-like 1 XM_006533842.2 36.1% 38% (many diffs)
16 mouse 57778 Fmnl1 formin-like 1 XM_006533841.2 36% 37.9% (many diffs)
17 mouse 57778 Fmnl1 formin-like 1 XM_006533838.2 35.7% 37.6% (many diffs)
18 mouse 57778 Fmnl1 formin-like 1 XM_006533837.2 35.7% 37.6% (many diffs)
19 mouse 57778 Fmnl1 formin-like 1 XM_006533843.2 35.2% 36.4% (many diffs)
20 mouse 57778 Fmnl1 formin-like 1 NM_019679.2 35.1% 36.3% (many diffs)
21 mouse 57778 Fmnl1 formin-like 1 XM_006533840.2 34.6% 35.7% (many diffs)
22 mouse 57778 Fmnl1 formin-like 1 XM_006533839.2 34.5% 35.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1455
ORF length:
1389
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC ACTCTTGAAC TGGGTGGCAC TGAAACCCAG CCAGATCACC GGCACTGTCT
121TCACAGAGCT CAATGATGAG AAGGTGCTGC AGGAGCTAGA CATGAGTGAT TTTGAGGAAC
181AGTTCAAGAC CAAGTCCCAA GGCCCCAGCC TGGACCTCAG CGCTCTCAAG AGTAAGGCAG
241CCCAGAAGGC CCCCAGCAAG GCGACACTCA TTGAGGCCAA CCGGGCCAAG AACTTGGCCA
301TCACCCTGCG GAAGGGCAAC CTGGGGGCCG AGCGCATCTG CCAAGCCATT GAGGCGTACG
361ACCTGCAGGC TCTGGGCCTG GACTTCCTGG AGCTGCTGAT GCGCTTCCTG CCCACAGAGT
421ATGAGCGCAG CCTCATCACC CGCTTTGAGC GGGAGCAGCG GCCAATGGAG GAGCTGTCAG
481AGGAGGACCG CTTCATGCTA TGCTTCAGCC GCATCCCGCG CCTGCCGGAG CGCATGACCA
541CACTCACCTT CCTGGGCAAC TTCCCGGACA CAGCCCAGCT GCTCATGCCG CAACTGAATG
601CCATCATTGC AGCCTCAATG TCCATCAAGT CCTCTGACAA ACTCCGCCAG ATCCTGGAGA
661TTGTCCTGGC CTTTGGCAAC TACATGAACA GTAGCAAGCG TGGGGCAGCC TATGGCTTCC
721GGCTCCAGAG CCTGGATGCG CTGTTGGAGA TGAAGTCGAC TGATCGCAAG CAGACGCTGC
781TGCACTACCT GGTGAAGGTC ATTGCTGAGA AGTACCCGCA ACTCACAGGC TTCCACAGCG
841ACCTGCACTT CCTGGACAAG GCGGGCTCAG TGTCCCTGGA CAGTGTCCTG GCGGACGTGC
901GCTCCCTGCA GCGAGGCCTA GAGTTGACAC AGAGAGAGTT TGTGCGGCAG GATGACTGCA
961TGGTGCTCAA GGAGTTCCTG AGGGCCAACT CGCCCACCAT GGACAAGCTG CTGGCAGACA
1021GCAAGACGGC TCAGGAGGCC TTTGAGTCTG TGGTGGAGTA CTTCGGAGAG AACCCCAAGA
1081CCACATCCCC AGGCCTGTTC TTCTCCCTCT TTAGCCGCTT CATTAAGGCC TACAAGAAAG
1141CTGAGCAGGA GGTGGAACAG TGGAAAAAAG AAGCCGCTGC CCAGGAGGCA GGCGCTGATA
1201CCCCGGGCAA AGGGGAGCCC CCAGCACCCA AGTCACCGCC AAAGGCCCGG CGGCCACAGA
1261TGGACCTCAT CTCTGAGCTG AAACGGAGGC AGCAGAAGGA GCCACTCATT TATGAGAGCG
1321ACCGTGATGG GGCCATTGAA GACATCATCA CAGATCTGCG GAACCAGCCC TACATCCGCG
1381CAGACACAGG CCGCCGCAGT GCCCGTCGGC GTCCCCCGGG CCCCCCACTG CAGGTCACCT
1441CCGAAGTCTC GCTGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1501tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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