Construct: ORF ccsbBroadEn_10723

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007996.1_s300c1, BRDN0000457051
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH5 (1003)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1003 CDH5 cadherin 5 NM_001795.5 85.2% 85% 1137_1481del;1550T>C;1805T>C
2 human 1003 CDH5 cadherin 5 XM_011522801.2 84.2% 84.1% (many diffs)
3 human 1003 CDH5 cadherin 5 XM_024450133.1 84.2% 84.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2076
ORF length:
2007
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCAGAGGCTC ATGATGCTCC TCGCCACATC GGGCGCCTGC CTGGGCCTGC
121TGGCAGTGGC AGCAGTGGCA GCAGCAGGTG CTAACCCTGC CCAACGGGAC ACCCACAGCC
181TGCTGCCCAC CCACCGGCGC CAAAAGAGAG ATTGGATTTG GAACCAGATG CACATTGATG
241AAGAGAAAAA CACCTCACTT CCCCATCATG TAGGCAAGAT CAAGTCAAGC GTGAGTCGCA
301AGAATGCCAA GTACCTGCTC AAAGGAGAAT ATGTGGGCAA GGTCTTCCGG GTCGATGCAG
361AGACAGGAGA CGTGTTCGCC ATTGAGAGGC TGGACCGGGA GAATATCTCA GAGTACCACC
421TCACTGCTGT CATTGTGGAC AAGGACACTG GCGAAAACCT GGAGACTCCT TCCAGCTTCA
481CCATCAAAGT TCATGACGTG AACGACAACT GGCCTGTGTT CACGCATCGG TTGTTCAATG
541CGTCCGTGCC TGAGTCGTCG GCTGTGGGGA CCTCAGTCAT CTCTGTGACA GCAGTGGATG
601CAGACGACCC CACTGTGGGA GACCACGCCT CTGTCATGTA CCAAATCCTG AAGGGGAAAG
661AGTATTTTGC CATCGATAAT TCTGGACGTA TTATCACAAT AACGAAAAGC TTGGACCGAG
721AGAAGCAGGC CAGGTATGAG ATCGTGGTGG AAGCGCGAGA TGCCCAGGGC CTCCGGGGGG
781ACTCGGGCAC GGCCACCGTG CTGGTCACTC TGCAAGACAT CAATGACAAC TTCCCCTTCT
841TCACCCAGAC CAAGTACACA TTTGTCGTGC CTGAAGACAC CCGTGTGGGC ACCTCTGTGG
901GCTCTCTGTT TGTTGAGGAC CCAGATGAGC CCCAGAACCG GATGACCAAG TACAGCATCT
961TGCGGGGCGA CTACCAGGAC GCTTTCACCA TTGAGACAAA CCCCGCCCAC AACGAGGGCA
1021TCATCAAGCC CATGAAGCCT CTGGATTATG AATACATCCA GCAATACAGC TTCATCGTCG
1081AGGCCACAGA CCCCACCATC GACCTCCGAT ACATGAGCCC TCCCGCGGGA AACAGAGCCC
1141AGGTCATTAT CAACATCACA GATGTGGACG AGCCCCCCAT TTTCCAGCAG CCTTTCTACC
1201ACTTCCAGCT GGTCCTGCAG ATCTCCGCAA TAGACAAGGA CATAACACCA CGAAACGTGA
1261AGTTCAAATT CACCTTGAAT ACTGAGAACA ACTTTACCCT CACGGATAAT CACGATAACA
1321CGGCCAACAT CACAGTCAAG TATGGGCAGT TTGACCGGGA GCATACCAAG GTCCACTTCC
1381TACCCGTGGT CATCTCAGAC AATGGGATGC CAAGTCGCAC GGGCACCAGC ACGCTGACCG
1441TGGCCGTGTG CAAGTGCAAC GAGCAGGGCG AGTTCACCTT CTGCGAGGAT ATGGCCGCCC
1501AGGTGGGCGT GAGCATCCAG GCAGTGGCAG CCATCTTACT CTGCATCCTC ACCATCACAG
1561TGATCACCCT GCTCATCTTC CTGCGGCGGC GGCTCCGGAA GCAGGCCCGC GCGCACGGCA
1621AGAGCGTGCC GGAGATCCAC GAGCAGCTGG TCACCTACGA CGAGGAGGGC GGCGGCGAGA
1681TGGACACCAC CAGCTACGAT GTGTCGGTGC TCAACTCGGT GCGCCGCGGC GGGGCCAAGC
1741CCCCGCGGCC CGCGCTGGAC GCCCGGCCTT CCCTCTATGC GCAGGTGCAG AAGCCACCGA
1801GGCACGCGCC TGGGGCACAC GGAGGGCCCG GGGAGATGGC AGCCATGATC GAGGTGAAGA
1861AGGACGAGGC GGACCACGAC GGCGACGGCC CCCCCTACGA CACGCTGCAC ATCTACGGCT
1921ACGAGGGCTC CGAGTCCATA GCCGAGTCCC TCAGCTCCCT GGGCACCGAC TCATCCGACT
1981CTGACGTGGA TTACGACTTC CTTAACGACT GGGGACCCAG GTTTAAGATG CTGGCTGAGC
2041TGTACGGCTC GGACCCCCGG GAGGAGCTGC TGTATTTGCC AACTTTCTTG TACAAAGTTG
2101Gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)