Construct: ORF ccsbBroadEn_10725
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014108.1_s300c1, BRDN0000456701
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH7 (1005)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1005 | CDH7 | cadherin 7 | NM_001317214.3 | 99.8% | 99.6% | 391A>G;687C>T;1727A>G |
| 2 | human | 1005 | CDH7 | cadherin 7 | NM_001362438.2 | 78.8% | 78.2% | (many diffs) |
| 3 | human | 1005 | CDH7 | cadherin 7 | NM_004361.5 | 78.8% | 78.2% | (many diffs) |
| 4 | human | 1005 | CDH7 | cadherin 7 | NM_033646.3 | 78.8% | 78.2% | (many diffs) |
| 5 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320706.1 | 86.1% | 94.4% | (many diffs) |
| 6 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | NM_001316743.1 | 70.5% | 77% | (many diffs) |
| 7 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | NM_172853.3 | 70.5% | 77% | (many diffs) |
| 8 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529600.3 | 70.5% | 77% | (many diffs) |
| 9 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529601.3 | 70.5% | 77% | (many diffs) |
| 10 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529608.3 | 70.5% | 77% | (many diffs) |
| 11 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529609.3 | 70.5% | 77% | (many diffs) |
| 12 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529610.3 | 70.5% | 77% | (many diffs) |
| 13 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_006529611.3 | 70.5% | 77% | (many diffs) |
| 14 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_011248006.2 | 70.5% | 77% | (many diffs) |
| 15 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320693.1 | 70.5% | 77% | (many diffs) |
| 16 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320698.1 | 70.5% | 77% | (many diffs) |
| 17 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320699.1 | 70.5% | 77% | (many diffs) |
| 18 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320701.1 | 70.5% | 77% | (many diffs) |
| 19 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_017320703.1 | 70.5% | 77% | (many diffs) |
| 20 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | NM_001316744.1 | 63.3% | 67.9% | (many diffs) |
| 21 | mouse | 241201 | Cdh7 | cadherin 7, type 2 | XM_011248008.2 | 27.6% | 29.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1956
- ORF length:
- 1890
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GTTGGGCAAA GTGGAGTTCT GCCATTTTCT GCAGCTAATA GCTCTTTTCC 121 TGTGTTTTTC TGGGATGAGT CAAGCAGAAC TCTCAAGGTC CAGATCAAAG CCCTATTTCC 181 AATCAGGGAG GTCCCGGACC AAGCGCAGCT GGGTGTGGAA TCAGTTCTTT GTGCTGGAGG 241 AATACATGGG TTCAGACCCC CTCTATGTAG GAAAGCTTCA CTCTGATGTT GATAAAGGAG 301 ATGGTTCCAT CAAATACATC TTGTCAGGCG AAGGGGCAAG TTCCATTTTC ATTATTGATG 361 AGAACACTGG GGATATTCAT GCCACCAAGA GACTGGATCG TGAGGAGCAG GCCTACTACA 421 CGCTCCGAGC TCAAGCGCTG GATAGGCTCA CCAACGAACC CGTGGAGCCC GAGTCGGAGT 481 TTGTCATCAA AATTCAGGAT ATCAACGACA ATGAACCCAA ATTTTTGGAT GGCCCATACA 541 CGGCAGGAGT TCCCGAAATG TCTCCCGTGG GGACCTCAGT GGTACAAGTG ACAGCGACGG 601 ATGCTGATGA TCCTACATAT GGCAACAGTG CCAGAGTGGT CTACAGTATT CTGCAAGGAC 661 AGCCGTACTT CTCAGTGGAG CCAAAGACAG GAGTCATCAA GACTGCCCTT CCAAACATGG 721 ATAGAGAGGC TAAAGACCAG TATTTGCTTG TTATTCAGGC AAAGGATATG GTTGGTCAAA 781 ATGGAGGACT GTCAGGAACT ACATCAGTCA CTGTGACCCT AACTGATGTC AACGATAATC 841 CACCTCGCTT TCCTCGAAGG TCTTATCAAT ATAACGTCCC AGAGTCATTA CCTGTAGCCT 901 CAGTTGTGGC CAGAATTAAA GCTGCTGATG CAGATATTGG AGCTAATGCT GAAATGGAGT 961 ACAAGATTGT GGATGGTGAT GGTTTGGGCA TTTTTAAGAT TTCTGTTGAC AAAGAAACCC 1021 AGGAAGGAAT CATTACTATA CAGAAGGAGC TGGATTTTGA AGCCAAAACA AGTTACACGC 1081 TACGGATAGA AGCTGCAAAT AAAGATGCCG ACCCTCGCTT TCTGAGCTTG GGTCCGTTCA 1141 GTGACACGAC AACTGTGAAG ATAATTGTGG AAGATGTAGA TGAGCCCCCT GTGTTCTCTT 1201 CACCCTTGTA CCCTATGGAG GTGTCGGAAG CTACCCAGGT TGGGAATATC ATTGGCACTG 1261 TAGCAGCTCA TGACCCAGAT TCTTCCAATA GCCCTGTGAG GTACTCAATT GACAGAAACA 1321 CAGACTTGGA GAGATACTTC AATATTGATG CCAACAGTGG GGTCATCACA ACTGCCAAGT 1381 CTTTGGATCG AGAGACAAAT GCTATTCACA ATATCACAGT CCTTGCAATG GAGAGCCAGA 1441 ATCCATCTCA AGTAGGAAGA GGCTATGTGG CCATCACTAT ACTTGACATC AATGATAACG 1501 CCCCTGAATT TGCCATGGAC TATGAGACCA CCGTCTGTGA AAATGCCCAG CCGGGGCAGG 1561 TTATCCAGAA AATCAGTGCT GTGGATAAAG ATGAGCCATC CAATGGACAC CAGTTTTACT 1621 TCAGCTTAAC AACGGATGCA ACAAATAACC ACAACTTTTC ATTGAAAGAT AACAAAGACA 1681 ACACAGCCTC AATACTGACC AGGAGAAACG GCTTCCGGAG ACAGGAACAA TCAGTTTACT 1741 ATCTGCCAAT TTTCATTGTG GACAGTGGAT CTCCCTCACT TAGCAGCACC AGCACCCTCA 1801 CCATCCGCGT GTGTGACTGT GATGCTGACG GCGTAGCCCA GACCTGCAAT GCAGAGGCCT 1861 ATGTCCTACC TGCTGGCCTC AGTACAGGAG CCCTGATAGC CATACTCGCC TGTGTCTTGA 1921 CATTATTGGG TAGGTACTGT TTCCAGGGCT TGCTCTGCCC AACTTTCTTG TACAAAGTTG 1981 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac