Construct: ORF ccsbBroadEn_10742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010619.1_s300c1, BRDN0000385833
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COL9A1 (1297)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1297 COL9A1 collagen type IX alpha 1 chain NM_001851.5 35.5% 35.5% (many diffs)
2 human 1297 COL9A1 collagen type IX alpha 1 chain XM_011535429.3 35.1% 35.1% (many diffs)
3 human 1297 COL9A1 collagen type IX alpha 1 chain XM_017010246.2 15.4% 15.4% (many diffs)
4 mouse 12839 Col9a1 collagen, type IX, alpha 1 XM_006495649.3 60% 61.2% (many diffs)
5 mouse 12839 Col9a1 collagen, type IX, alpha 1 NM_007740.3 30.4% 31% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1050
ORF length:
984
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA GACCTGCTGG AAAATTCCAG TTTTCTTCTT TGTGTGCAGT TTCCTGGAAC
121CCTGGGCATC TGCAGCTGTC AAGCGTCGCC CCAGATTCCC TGTCAATTCC AATTCTAATG
181GTGGAAATGA ACTCTGTCCA AAGATCAGGA TTGGCCAAGA TGACTTACCA GGGTTTGATC
241TGATCTCTCA GTTCCAGGTA GATAAAGCAG CATCTAGAAG AGCTATCCAG AGAGTAGTGG
301GATCAGCTAC ATTGCAGGTG GCTTACAAGT TGGGAAATAA TGTAGACTTC AGGATTCCAA
361CTAGGAATTT ATATCCCAGT GGACTGCCTG AAGAATACTC CTTCTTGACG ACGTTTCGAA
421TGACTGGAAG CACTCTCAAA AAGAACTGGA ACATTTGGCA GATTCAGGAT TCCTCTGGGA
481AGGAGCAAGT TGGCATAAAG ATTAATGGCC AAACACAATC TGTTGTATTT TCATACAAGG
541GACTGGATGG AAGTCTCCAA ACAGCAGCCT TTTCGAATTT GTCCTCCTTG TTTGATTCCC
601AGTGGCATAA GATCATGATT GGCGTGGAGA GGAGTAGTGC TACTCTTTTT GTTGACTGCA
661ACAGGATTGA ATCTTTACCT ATAAAGCCAA GAGGCCCAAT TGACATTGAT GGCTTTGCTG
721TGCTGGGAAA ACTTGCAGAT AATCCTCAAG TTTCTGTTCC ATTTGAACTT CAATGGATGC
781TGATCCATTG TGACCCCCTG CGGCCCAGGA GAGAAACTTG CCATGAGCTG CCAGCCAGAA
841TAACGCCCAG CCAGACCACC GACGAGAGAG GTCCCCCGGG TGAGCAGGGT CCTCCCGGGC
901CTCCGGGCCC CCCTGGAGTT CCAGGCATCG ATGGCATCGA CGGTGACCGA GGTCCTAAGG
961GCCCCCCGGG CCCCCCGGGT CCTGCAGGTG AACCGGGAAA GCCAGGAGCT CCAGGCAAGC
1021CTGGCACACC TGGCGCTGAT ACCAGTCCTT GCCCAACTTT CTTGTACAAA Gttggcatta
1081taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)