Construct: ORF ccsbBroadEn_10759

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018148.1_s300c1, BRDN0000388462
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTNNA1 (1495)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1495 CTNNA1 catenin alpha 1 NM_001290312.1 99.8% 100% 951G>A;1110G>A
2 human 1495 CTNNA1 catenin alpha 1 NM_001323987.1 99.8% 100% 951G>A;1110G>A
3 human 1495 CTNNA1 catenin alpha 1 NM_001323988.1 99.8% 100% 951G>A;1110G>A
4 human 1495 CTNNA1 catenin alpha 1 NM_001323989.1 99.8% 100% 951G>A;1110G>A
5 human 1495 CTNNA1 catenin alpha 1 NM_001323990.1 99.8% 100% 951G>A;1110G>A
6 human 1495 CTNNA1 catenin alpha 1 NM_001323991.1 99.8% 100% 951G>A;1110G>A
7 human 1495 CTNNA1 catenin alpha 1 NM_001323992.1 99.8% 100% 951G>A;1110G>A
8 human 1495 CTNNA1 catenin alpha 1 NM_001323993.1 99.8% 100% 951G>A;1110G>A
9 human 1495 CTNNA1 catenin alpha 1 NM_001323994.1 99.8% 100% 951G>A;1110G>A
10 human 1495 CTNNA1 catenin alpha 1 NM_001323995.1 99.8% 100% 951G>A;1110G>A
11 human 1495 CTNNA1 catenin alpha 1 NM_001323996.1 99.8% 100% 951G>A;1110G>A
12 human 1495 CTNNA1 catenin alpha 1 NM_001323997.1 99.8% 100% 951G>A;1110G>A
13 human 1495 CTNNA1 catenin alpha 1 NM_001323998.1 99.8% 100% 951G>A;1110G>A
14 human 1495 CTNNA1 catenin alpha 1 NM_001323999.1 99.8% 100% 951G>A;1110G>A
15 human 1495 CTNNA1 catenin alpha 1 NM_001324000.1 99.8% 100% 951G>A;1110G>A
16 human 1495 CTNNA1 catenin alpha 1 NM_001324011.1 94% 94.2% 184_185ins93;858G>A;1017G>A
17 human 1495 CTNNA1 catenin alpha 1 NM_001324001.1 91.4% 91.6% 951G>A;1110G>A;1188_1189ins135
18 human 1495 CTNNA1 catenin alpha 1 NM_001324002.1 84.7% 83.3% (many diffs)
19 human 1495 CTNNA1 catenin alpha 1 NM_001324003.1 84.7% 83.3% (many diffs)
20 human 1495 CTNNA1 catenin alpha 1 NM_001324004.1 84.7% 83.3% (many diffs)
21 human 1495 CTNNA1 catenin alpha 1 NM_001324005.1 84.7% 83.3% (many diffs)
22 human 1495 CTNNA1 catenin alpha 1 NM_001324012.1 84.7% 84.8% 0_1ins243;708G>A;867G>A
23 human 1495 CTNNA1 catenin alpha 1 NM_001324013.1 84.7% 84.8% 0_1ins243;708G>A;867G>A
24 human 1495 CTNNA1 catenin alpha 1 NM_001324006.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
25 human 1495 CTNNA1 catenin alpha 1 NM_001324007.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
26 human 1495 CTNNA1 catenin alpha 1 NM_001324008.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
27 human 1495 CTNNA1 catenin alpha 1 NM_001324009.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
28 human 1495 CTNNA1 catenin alpha 1 NM_001324010.1 78.7% 78.9% 0_1ins339;612G>A;771G>A
29 human 1495 CTNNA1 catenin alpha 1 NM_001290310.3 68.3% 68.4% 1_741del;1692G>A;1851G>A
30 human 1495 CTNNA1 catenin alpha 1 NM_001290309.3 66.6% 66.7% 1_801del;1752G>A;1911G>A
31 human 1495 CTNNA1 catenin alpha 1 NM_001323982.2 59% 59.1% 1_1110del;2061G>A;2220G>A
32 human 1495 CTNNA1 catenin alpha 1 NM_001323983.1 59% 59.1% 1_1110del;2061G>A;2220G>A
33 human 1495 CTNNA1 catenin alpha 1 NM_001323984.2 59% 59.1% 1_1110del;2061G>A;2220G>A
34 human 1495 CTNNA1 catenin alpha 1 NM_001903.5 59% 59.1% 1_1110del;2061G>A;2220G>A
35 human 1495 CTNNA1 catenin alpha 1 NM_001323985.2 58% 58.1% (many diffs)
36 human 1495 CTNNA1 catenin alpha 1 NM_001323986.2 55.6% 55.7% (many diffs)
37 human 1495 CTNNA1 catenin alpha 1 NM_001290307.2 50.4% 49.3% (many diffs)
38 mouse 12385 Ctnna1 catenin (cadherin associate... XM_006525548.3 91.6% 100% (many diffs)
39 mouse 12385 Ctnna1 catenin (cadherin associate... NM_009818.1 54.1% 59.1% (many diffs)
40 mouse 12385 Ctnna1 catenin (cadherin associate... XM_011246818.2 54.1% 59.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1674
ORF length:
1608
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CAAGAAGACC AGGGACTTGC GTAGACAGCT CCGCAAAGCT GTCATGGACC
121ACGTTTCAGA TTCTTTCCTG GAAACCAATG TTCCACTTTT GGTATTGATT GAAGCTGCAA
181AGAATGGAAA TGAGAAAGAA GTTAAGGAGT ATGCCCAAGT TTTCCGTGAA CATGCCAACA
241AATTGATTGA GGTTGCCAAC TTGGCCTGTT CCATCTCAAA TAATGAAGAA GGTGTAAAGC
301TTGTTCGAAT GTCTGCAAGC CAGTTAGAAG CCCTCTGTCC TCAGGTTATT AATGCTGCAC
361TGGCTTTAGC AGCAAAACCA CAGAGTAAAC TGGCCCAAGA GAACATGGAT CTTTTTAAAG
421AACAATGGGA AAAACAAGTC CGTGTTCTCA CAGATGCTGT CGATGACATT ACTTCCATTG
481ATGACTTCTT GGCTGTCTCA GAGAATCACA TTTTGGAAGA TGTGAACAAA TGTGTCATTG
541CTCTCCAAGA GAAGGATGTG GATGGCCTGG ACCGCACAGC TGGTGCAATT CGAGGCCGGG
601CAGCCCGGGT CATTCACGTA GTCACCTCAG AGATGGACAA CTATGAGCCA GGAGTCTACA
661CAGAGAAGGT TCTGGAAGCC ACTAAGCTGC TCTCCAACAC AGTCATGCCA CGTTTTACTG
721AGCAAGTAGA AGCAGCCGTG GAAGCCCTCA GCTCGGACCC TGCCCAGCCC ATGGATGAGA
781ATGAGTTTAT CGATGCTTCC CGCCTGGTAT ATGATGGCAT CCGGGACATC AGGAAAGCAG
841TGCTGATGAT AAGGACCCCT GAGGAGTTGG ATGACTCTGA CTTTGAGACA GAAGATTTTG
901ATGTCAGAAG CAGGACGAGC GTCCAGACAG AAGACGATCA GCTGATAGCT GGCCAGAGTG
961CCCGGGCGAT CATGGCTCAG CTTCCCCAGG AGCAAAAAGC GAAGATTGCG GAACAAGTGG
1021CCAGCTTCCA GGAAGAAAAG AGCAAGCTGG ATGCTGAAGT GTCCAAATGG GACGACAGTG
1081GCAATGACAT CATTGTGCTG GCCAAGCAGA TGTGCATGAT TATGATGGAG ATGACAGACT
1141TTACCCGAGG TAAAGGACCA CTCAAAAATA CATCAGATGT CATCAGTGCT GCCAAGAAAA
1201TTGCTGAGGC AGGATCCAGG ATGGACAAGC TTGGCCGCAC CATTGCAGAC CATTGCCCCG
1261ACTCGGCTTG CAAGCAGGAC CTGCTGGCCT ACCTGCAACG CATCGCCCTC TACTGCCACC
1321AGCTGAACAT CTGCAGCAAG GTCAAGGCCG AGGTGCAGAA TCTCGGCGGG GAGCTTGTTG
1381TCTCTGGGGT GGACAGCGCC ATGTCCCTGA TCCAGGCAGC CAAGAACTTG ATGAATGCTG
1441TGGTGCAGAC AGTGAAGGCA TCCTACGTCG CCTCTACCAA ATACCAAAAG TCACAGGGTA
1501TGGCTTCCCT CAACCTTCCT GCTGTGTCAT GGAAGATGAA GGCACCAGAG AAAAAGCCAT
1561TGGTGAAGAG AGAGAAACAG GATGAGACAC AGACCAAGAT TAAACGGGCA TCTCAGAAGA
1621AGCACGTGAA CCCGGTGCAG GCCCTCAGCG AGTTCAAAGC TATGGACAGC ATCTACCCAA
1681CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)