Construct: ORF ccsbBroadEn_10784
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012199.1_s300c1, BRDN0000393243
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAH6 (1768)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532657.1 | 14.5% | 14.2% | (many diffs) |
| 2 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_017003522.2 | 14.5% | 14.2% | (many diffs) |
| 3 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_017003523.2 | 14.5% | 14.2% | (many diffs) |
| 4 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532655.2 | 14.2% | 13.8% | (many diffs) |
| 5 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532654.1 | 13.5% | 13.2% | (many diffs) |
| 6 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_017003521.1 | 13.4% | 13.1% | (many diffs) |
| 7 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532653.1 | 13.2% | 12.9% | (many diffs) |
| 8 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532652.1 | 13.2% | 12.9% | (many diffs) |
| 9 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | NM_001370.2 | 13.1% | 12.7% | (many diffs) |
| 10 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_006711956.2 | 13.1% | 12.7% | (many diffs) |
| 11 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532649.3 | 13.1% | 12.7% | (many diffs) |
| 12 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532650.3 | 13.1% | 12.7% | (many diffs) |
| 13 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_011532660.1 | 11.4% | 10.7% | (many diffs) |
| 14 | human | 1768 | DNAH6 | dynein axonemal heavy chain 6 | XM_017003524.1 | 9.1% | 8.9% | (many diffs) |
| 15 | mouse | 330355 | Dnah6 | dynein, axonemal, heavy cha... | XM_006506302.4 | 14% | 14.8% | (many diffs) |
| 16 | mouse | 330355 | Dnah6 | dynein, axonemal, heavy cha... | XR_377473.4 | 13.7% | (many diffs) | |
| 17 | mouse | 330355 | Dnah6 | dynein, axonemal, heavy cha... | NM_001164669.1 | 11.5% | 12.1% | (many diffs) |
| 18 | mouse | 330355 | Dnah6 | dynein, axonemal, heavy cha... | XR_003956215.1 | 11% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1719
- ORF length:
- 1653
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGGA ACAAACAAAA TTGAACACTA TACTATGTCA GACTTTTGTA TTCTGTTATT 121 TGTGGTCTTT GGGTGGAAAC CTAACTGAAA ACTACTATGA TTCTTTTGAT ACATTTATTA 181 GAACACAATT TGATGATAAT CCTGATGCCA GGCTTCCCAA TTCTGGTGAT CTGTGGAGCA 241 TTCATATGGA CTTTGACACC AAACGGCTGG ATCCCTGGGA ACGAATCATA CCTACTTTCA 301 AATACAACCG AGATGTTCCA TTTTTTGAAA TGCTTGTCCC CACAACTGAC ACAGTGCGCT 361 ATGGGTATCT AATGGAAAAA CTACTGGCAG TCAAGCATTC CGTGTTGTTT ACTGGAATAA 421 CTGGAGTGGG CAAGTCTGTG ATTGCAAAAG GATTGCTAAA TAAAATTCAA GAATCAGCTG 481 GCTATGTCCC TGTTTATCTG AATTTTTCTG CTCAAACTTC ATCTGCAAGG ACACAAGAGA 541 TCATTGAGTC AAAACTGGAG AGAAAAAGAA AAAATATTCT AGGAGCACCG GGAAACAAAC 601 GAATTGTGAT TTTTGTTGAT GATTTAAACA TGCCCAGACT GGATCGCTAT GGCTCTCAGC 661 CTCCGATTGA ATTACTTCGG CAGTATCAAG ATTTTGGGGG ATTTTATGAC AGAAACAAAC 721 TGTTTTGGAA AGAAATACAG GATGTAACAA TCATATCGGC ATGTGCACCT CCAGGCGGTG 781 GCCGCAACCC TGTGACTCCC CGCTTCATCA GACACTTCAG CATGCTGTGC CTCCCAATGC 841 CCTCAGAGCA CAGTCTGAAA CAGATTTTTC AGGCCATCTT AAATGGTTTC CTGAGTGACT 901 TTCCACCAGC TGTAAAGCAA ACTGCATCAA GCATTGTAGA AGCCTCAGTT GAGATTTATA 961 ACAAAATGAG TGTTGACCTC CTGCCAACAC CCGCCAAGTC CCATTATGTC TTTAACTTGA 1021 GGGACTTATC CAAATGTGTG CAAGACAAAC ATTTTGGAAT TGCAATTGAC CTGGAATATT 1081 TTTTGAATAA GCCCATCATA TTTGGAGATT TCATTAAGTT TGGAGCAGAT AAAGCTGATC 1141 GGATTTATGA TGACATGCCT GATATAGAGA AAACTGCAAA TGTTCTACAG GACTATCTTG 1201 ATGATTATAA TCTCACAAAT CCCAAAGAAG TAAAGTTGGT GTTCTTCCAG GATGCTATAG 1261 AACATGTTTC AAGGATTGCT CGGATGATAC GTCAAGAAAG AGGCAATGCC CTGCTTGTTG 1321 GAGTAGGAGG CACAGGAAAG CAGTCACTCA CGAGACTTGC AGCTCATATA TGCGGTTACA 1381 AATGTTTGCA GATTGAACTC AGCCGGGGAT ATAATTATGA TAGTTTTCAT GAAGACCTGA 1441 GGAAGTTGTA CAAAATGGCT GGTGTAGAAG ACAAGAATAT GGTTTTCCTT TTCACTGACA 1501 CCCAGATTGT AGTGGAGGAG TTCCTAGAAG ATATAAATAA CATCCTGAAC TCAGGTGAAG 1561 TGCCTAATTT ATTTGAAAAG GATGAACTGG AGCAGGTTTT AGCGGCCACC AGACCAAGAG 1621 CAAAAGAAGT AGGAATTTCT GAGGGGAACA GAGACGAGGT AGGATGTGCC AGAGTAGTTA 1681 TGTGGCTTTA TCACAAAAAC GTTTCTTCAC CTTTTATTTA CCCAACTTTC TTGTACAAAG 1741 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac