Construct: ORF ccsbBroadEn_10787

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005417.1_s300c1, BRDN0000393697
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DYNC1I2 (1781)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271788.2 100% 100%
2 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271789.2 100% 100%
3 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271790.2 99.8% 99.8% 1723_1724insAGC
4 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001320884.2 99.8% 99.8% 1723_1724insAGC
5 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271786.2 97.1% 97.1% 226_279del
6 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271787.2 97.1% 97.1% 226_279del
7 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001320882.2 96.8% 96.8% 317_376del
8 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001320883.2 96.8% 96.8% 317_376del
9 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... XM_006712347.4 96.6% 96.6% 317_376del;1783_1784insAGC
10 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... XM_017003525.2 96.6% 96.6% 317_376del;1783_1784insAGC
11 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001271785.2 95.9% 95.9% 226_243del;335_394del
12 human 1781 DYNC1I2 dynein cytoplasmic 1 interm... NM_001378.3 95.9% 95.9% 226_243del;335_394del
13 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198876.1 91.6% 97.8% (many diffs)
14 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_010064.4 91.6% 97.8% (many diffs)
15 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_006498679.2 91.5% 97.7% (many diffs)
16 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_017315326.1 91.5% 97.7% (many diffs)
17 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198875.1 90.7% 96.9% (many diffs)
18 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_006498678.2 90.7% 96.9% (many diffs)
19 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198874.1 88.7% 94.7% (many diffs)
20 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_006498677.1 88.7% 94.7% (many diffs)
21 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_017315324.1 88.6% 94.6% (many diffs)
22 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001347173.1 87.9% 93.8% (many diffs)
23 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_017315319.1 87.9% 93.8% (many diffs)
24 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_006498676.1 87.7% 93.7% (many diffs)
25 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198873.1 86.3% 92.1% (many diffs)
26 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198878.1 86.3% 92.1% (many diffs)
27 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198872.1 85.6% 91.4% (many diffs)
28 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... NM_001198877.1 85.6% 91.4% (many diffs)
29 mouse 13427 Dync1i2 dynein cytoplasmic 1 interm... XM_006498680.3 71.4% 73.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1902
ORF length:
1836
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC AGACAAAAGT GAATTAAAGG CTGAGTTGGA ACGTAAGAAG CAGCGACTGG
121CCCAAATCAG AGAGGAAAAG AAGAGAAAAG AAGAAGAAAG GAAAAAAAAA GAAACAGACC
181AGAAGAAGGA AGCTGTTGCT CCTGTGCAAG AAGAATCAGA TCTTGAAAAA AAAAGGAGAG
241AAGCTGAAGC ATTGCTTCAA AGCATGGGGC TAACTCCAGA ATCCCCCATT GTCCCTCCTC
301CTATGTCTCC ATCCTCCAAA TCTGTGAGCA CTCCAAGTGA AGCTGGAAGC CAAGACTCTG
361GAGATGGCGC CGTGGGATCT AGACGAGGAC CTATTAAACT TGGAATGGCT AAAATCACGC
421AAGTCGACTT TCCTCCTCGA GAAATTGTCA CGTATACAAA GGAAACTCAG ACTCCAGTTA
481TGGCTCAACC CAAAGAAGAT GAAGAGGAAG ATGATGATGT AGTGGCTCCT AAACCACCTA
541TTGAACCTGA AGAAGAGAAA ACTTTAAAGA AAGATGAGGA AAATGATAGT AAAGCTCCCC
601CTCATGAGCT GACTGAAGAA GAAAAGCAAC AAATCTTGCA CTCTGAGGAA TTTTTAAGTT
661TCTTTGACCA TTCTACAAGA ATTGTAGAAA GAGCTCTTTC TGAGCAGATT AACATCTTCT
721TTGACTATAG TGGGAGAGAT TTGGAAGACA AAGAAGGAGA GATTCAAGCA GGTGCTAAAC
781TGTCATTAAA TCGACAATTT TTTGACGAAC GTTGGTCAAA GCATCGGGTG GTTAGTTGTT
841TGGATTGGTC ATCTCAGTAT CCGGAGTTAC TCGTGGCTTC CTATAACAAC AATGAAGATG
901CCCCTCATGA GCCTGATGGT GTGGCCCTTG TATGGAATAT GAAATACAAA AAAACTACCC
961CAGAGTATGT GTTTCACTGC CAGTCAGCTG TGATGTCTGC CACATTTGCA AAATTTCATC
1021CAAATCTTGT TGTTGGTGGT ACATATTCAG GCCAAATTGT GCTTTGGGAT AACCGTAGCA
1081ATAAAAGAAC TCCAGTGCAA AGAACTCCAC TGTCAGCAGC TGCACACACA CACCCTGTAT
1141ATTGTGTAAA TGTTGTTGGA ACACAAAATG CTCACAATCT GATTAGCATC TCTACTGATG
1201GAAAAATTTG TTCATGGAGT CTGGACATGC TTTCCCATCC ACAGGATAGC ATGGAGTTGG
1261TTCATAAACA GTCAAAAGCA GTAGCTGTGA CATCTATGTC CTTCCCTGTT GGAGATGTCA
1321ACAACTTTGT TGTTGGGAGT GAAGAAGGTT CTGTGTACAC AGCATGCCGC CATGGCAGCA
1381AAGCTGGAAT CAGTGAGATG TTTGAGGGGC ATCAAGGACC AATCACTGGC ATCCATTGTC
1441ATGCAGCTGT TGGAGCAGTA GACTTCTCAC ATCTTTTTGT CACTTCATCG TTTGACTGGA
1501CAGTAAAGCT TTGGACAACT AAGAATAACA AGCCTTTGTA TTCATTTGAA GATAATGCAG
1561ACTATGTTTA TGATGTTATG TGGTCACCTA CCCACCCAGC CCTGTTTGCC TGTGTGGATG
1621GCATGGGGAG ATTGGATTTG TGGAATCTCA ATAATGACAC AGAGGTACCA ACTGCCAGCA
1681TTTCTGTGGA GGGTAATCCT GCTCTTAATC GTGTGAGATG GACCCATTCT GGCAGAGAGA
1741TTGCTGTGGG TGATTCTGAA GGACAGATTG TTATATACGA TGTGGGAGAG CAGATTGCTG
1801TTCCCCGCAA TGATGAATGG GCACGGTTTG GCCGAACACT TGCAGAAATT AATGCAAACC
1861GAGCTGATGC AGAGGAGGAA GCAGCTACCC GAATACCTGC TTACCCAACT TTCTTGTACA
1921AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

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