Construct: ORF ccsbBroadEn_10795
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008489.1_s300c1, BRDN0000397909
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LPAR1 (1902)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351397.2 | 95% | 95% | 1_54del |
| 2 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351398.2 | 95% | 95% | 1_54del |
| 3 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351399.2 | 95% | 95% | 1_54del |
| 4 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351400.2 | 95% | 95% | 1_54del |
| 5 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351401.2 | 95% | 95% | 1_54del |
| 6 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351402.2 | 95% | 95% | 1_54del |
| 7 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351403.2 | 95% | 95% | 1_54del |
| 8 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351404.2 | 95% | 95% | 1_54del |
| 9 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351405.2 | 95% | 95% | 1_54del |
| 10 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351406.2 | 95% | 95% | 1_54del |
| 11 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351407.2 | 95% | 95% | 1_54del |
| 12 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351408.2 | 95% | 95% | 1_54del |
| 13 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351409.2 | 95% | 95% | 1_54del |
| 14 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351410.2 | 95% | 95% | 1_54del |
| 15 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351411.2 | 95% | 95% | 1_54del |
| 16 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351412.2 | 95% | 95% | 1_54del |
| 17 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351413.2 | 95% | 95% | 1_54del |
| 18 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351414.2 | 95% | 95% | 1_54del |
| 19 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351415.2 | 95% | 95% | 1_54del |
| 20 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351416.2 | 95% | 95% | 1_54del |
| 21 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351417.2 | 95% | 95% | 1_54del |
| 22 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351418.2 | 95% | 95% | 1_54del |
| 23 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351419.1 | 95% | 95% | 1_54del |
| 24 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001351420.1 | 95% | 95% | 1_54del |
| 25 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_001401.5 | 95% | 95% | 1_54del |
| 26 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | NM_057159.4 | 95% | 95% | 1_54del |
| 27 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | XM_005251782.3 | 95% | 95% | 1_54del |
| 28 | human | 1902 | LPAR1 | lysophosphatidic acid recep... | XM_017014404.2 | 95% | 95% | 1_54del |
| 29 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_001290486.1 | 90.4% | 97.6% | (many diffs) |
| 30 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_010336.2 | 85.9% | 92.8% | (many diffs) |
| 31 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | NM_172989.1 | 85.9% | 92.8% | (many diffs) |
| 32 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249928.2 | 85.9% | 92.8% | (many diffs) |
| 33 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249929.2 | 85.9% | 92.8% | (many diffs) |
| 34 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249930.2 | 85.9% | 92.8% | (many diffs) |
| 35 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249931.2 | 85.9% | 92.8% | (many diffs) |
| 36 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249932.2 | 85.9% | 92.8% | (many diffs) |
| 37 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249933.2 | 85.9% | 92.8% | (many diffs) |
| 38 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249934.2 | 85.9% | 92.8% | (many diffs) |
| 39 | mouse | 14745 | Lpar1 | lysophosphatidic acid recep... | XM_011249935.2 | 85.9% | 92.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1104
- ORF length:
- 1038
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGAACCACAG TGCTTCTACA ACGAGTCCAT TGCCTTCTTT TATAACCGAA 121 GTGGAAAGCA TCTTGCCACA GAATGGAACA CAGTCAGCAA GCTGGTGATG GGACTTGGAA 181 TCACTGTTTG TATCTTCATC ATGTTGGCCA ACCTATTGGT CATGGTGGCA ATCTATGTCA 241 ACCGCCGCTT CCATTTTCCT ATTTATTACC TAATGGCTAA TCTGGCTGCT GCAGACTTCT 301 TTGCTGGGTT GGCCTACTTC TATCTCATGT TCAACACAGG ACCCAATACT CGGAGACTGA 361 CTGTTAGCAC ATGGCTCCTT CGTCAGGGCC TCATTGACAC CAGCCTGACG GCATCTGTGG 421 CCAACTTACT GGCTATTGCA ATCGAGAGGC ACATTACGGT TTTCCGCATG CAGCTCCACA 481 CACGGATGAG CAACCGGCGG GTAGTGGTGG TCATTGTGGT CATCTGGACT ATGGCCATCG 541 TTATGGGTGC TATACCCAGT GTGGGCTGGA ACTGTATCTG TGATATTGAA AATTGTTCCA 601 ACATGGCACC CCTCTACAGT GACTCTTACT TAGTCTTCTG GGCCATTTTC AACTTGGTGA 661 CCTTTGTGGT AATGGTGGTT CTCTATGCTC ACATCTTTGG CTATGTTCGC CAGAGGACTA 721 TGAGAATGTC TCGGCATAGT TCTGGACCCC GGCGGAATCG GGATACCATG ATGAGTCTTC 781 TGAAGACTGT GGTCATTGTG CTTGGGGCCT TTATCATCTG CTGGACTCCT GGATTGGTTT 841 TGTTACTTCT AGACGTGTGC TGTCCACAGT GCGACGTGCT GGCCTATGAG AAATTCTTCC 901 TTCTCCTTGC TGAATTCAAC TCTGCCATGA ACCCCATCAT TTACTCCTAC CGCGACAAAG 961 AAATGAGCGC CACCTTTAGG CAGATCCTCT GCTGCCAGCG CAGTGAGAAC CCCACCGGCC 1021 CCACAGAAGG CTCAGACCGC TCGGCTTCCT CCCTCAACCA CACCATCTTG GCTGGAGTTC 1081 ACAGCAATGA CCACTCTGTG GTTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1141 agcattgctt atcaatttgt tgcaacgaac