Construct: ORF ccsbBroadEn_10821
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008094.1_s300c1, BRDN0000388628
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FGF7 (2252)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2252 | FGF7 | fibroblast growth factor 7 | NM_002009.4 | 49.6% | 48.4% | (many diffs) |
| 2 | mouse | 14178 | Fgf7 | fibroblast growth factor 7 | NM_008008.4 | 44.5% | 44.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 357
- ORF length:
- 291
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA CAAATGGATA CTGACATGGA TCCTGCCAAC TTTGCTCTAC AGATCATGCT 121 TTCACATTAT CTGTCTAGTG GGTACTATAT CTTTAGCTTG CAATGACATG ACTCCAGAGC 181 AAATGGCTAC AAATGTGAAC TGTTCCAGCC CTGAGCGACA CACAAGAAGT TATGATTACA 241 TGGAAGGAGA GGATATAAGA GTGAGAAGAC TCTTCTGTCG AACACAGTGG TACCTGAGGA 301 TCGATAAAAG AGGCAAAGTA AAAGGGACCC AAGAGATGAA GAATAATTAC AGTAAGTACC 361 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 421 aac