Construct: ORF ccsbBroadEn_10870

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009667.1_s300c1, BRDN0000389964
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HCFC1 (3054)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3054 HCFC1 host cell factor C1 XM_017029471.2 21.2% 21.2% 1283C>T;1285_6039del
2 human 3054 HCFC1 host cell factor C1 NM_005334.3 21% 20.9% 1283C>T;1285_6105del
3 human 3054 HCFC1 host cell factor C1 XM_011531148.3 20.9% 20.9% 1283C>T;1285_6114del
4 human 3054 HCFC1 host cell factor C1 XM_011531147.3 20.9% 20.9% 1283C>T;1285_6117del
5 human 3054 HCFC1 host cell factor C1 XM_006724816.3 20.5% 20.5% 1283C>T;1285_6237del
6 human 3054 HCFC1 host cell factor C1 XM_006724815.3 20.5% 20.5% 1283C>T;1285_6240del
7 mouse 15161 Hcfc1 host cell factor C1 NM_008224.4 18.8% 20.8% (many diffs)
8 mouse 15161 Hcfc1 host cell factor C1 XM_017318387.1 18.8% 20.8% (many diffs)
9 mouse 15161 Hcfc1 host cell factor C1 XM_006527836.1 18.4% 20.3% (many diffs)
10 mouse 15161 Hcfc1 host cell factor C1 XM_006527835.1 18.4% 20.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1350
ORF length:
1284
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TTCGGCCGTG TCGCCCGCCA ACTTGCCAGC GGTGCTTCTG CAGCCCCGCT
121GGAAGCGAGT GGTGGGCTGG TCGGGTCCGG TGCCACGGCC CCGCCACGGC CACCGCGCCG
181TGGCCATCAA GGAGCTCATC GTGGTGTTTG GCGGCGGCAA CGAGGGAATA GTGGACGAAC
241TGCACGTGTA CAACACGGCA ACCAACCAGT GGTTCATCCC AGCCGTGAGG GGGGACATTC
301CCCCTGGGTG TGCAGCCTAT GGCTTCGTGT GTGACGGGAC TCGCCTCCTG GTGTTTGGTG
361GGATGGTGGA GTATGGGAAA TACAGCAATG ACCTCTACGA ACTCCAGGCG AGCCGGTGGG
421AGTGGAAGAG ACTCAAAGCA AAGACGCCCA AAAACGGGCC CCCTCCGTGT CCTCGACTCG
481GGCACAGCTT CTCCCTTGTG GGCAACAAAT GCTACCTGTT TGGGGGTCTG GCCAATGATA
541GCGAGGACCC AAAGAACAAC ATTCCAAGGT ACCTGAATGA CTTATATATC CTGGAATTAC
601GGCCAGGCTC TGGAGTGGTA GCCTGGGACA TTCCCATCAC TTACGGGGTC CTACCACCAC
661CCCGGGAGTC ACATACTGCC GTGGTCTACA CCGAAAAAGA CAATAAGAAG TCCAAGCTGG
721TGATCTACGG CGGGATGAGT GGCTGCAGGC TGGGGGACCT GTGGACCCTA GATATTGACA
781CCCTGACGTG GAATAAGCCC AGTCTCAGCG GGGTGGCGCC TCTTCCTCGC AGTCTCCACT
841CGGCAACCAC CATCGGAAAT AAAATGTACG TGTTTGGTGG CTGGGTGCCT CTCGTCATGG
901ATGACGTCAA AGTGGCCACA CACGAGAAGG AGTGGAAGTG TACCAACACG CTGGCTTGTC
961TCAACCTGGA TACCATGGCC TGGGAGACCA TCCTGATGGA TACACTGGAG GACAACATCC
1021CCCGTGCTCG GGCTGGCCAC TGCGCAGTCG CCATCAACAC CCGCCTGTAC ATTTGGAGTG
1081GGCGTGACGG CTACCGCAAG GCCTGGAACA ACCAGGTCTG CTGCAAGGAC CTCTGGTACC
1141TAGAGACAGA AAAGCCACCA CCCCCAGCCC GAGTACAACT GGTACGCGCC AACACCAACT
1201CCCTGGAGGT GAGCTGGGGG GCAGTGGCAA CAGCCGACAG CTACCTTCTC CAGCTCCAGA
1261AATATGACAT TCCTGCCACG GCTGCTACTG CCACCTCCCC TACACCCAAT CCGGTCCCAT
1321CTGTGCCTGC CAACCCTCCC AAGAGCCTTT GCCCAACTTT CTTGTACAAA GTtggcatta
1381taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.