Construct: ORF ccsbBroadEn_10899

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014329.1_s300c1, BRDN0000392392
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IDS (3423)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3423 IDS iduronate 2-sulfatase NM_006123.5 89.2% 82.4% (many diffs)
2 human 3423 IDS iduronate 2-sulfatase NR_104128.2 62.9% 1_169del;1106_1488del
3 human 3423 IDS iduronate 2-sulfatase NM_000202.8 55.6% 52.2% (many diffs)
4 human 3423 IDS iduronate 2-sulfatase NM_001166550.4 39.3% 35.9% (many diffs)
5 mouse 15931 Ids iduronate 2-sulfatase NM_010498.3 47.9% 46.1% (many diffs)
6 mouse 15931 Ids iduronate 2-sulfatase XM_006527846.3 28.5% 27% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1002
ORF length:
936
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCC GCCACCCCGG ACCGGCCGAG GCCTTCTCTG GCTGGGTCTG GTTCTGAGCT
121CCGTCTGCGT CGCCCTCGGA TCCGAAACGC AGGCCAACTC GACCACAGAT GCTCTGAACG
181TTCTTCTCAT CATCGTGGAT GACCTGCGCC CCTCCCTGGG CTGTTATGGG GATAAGCTGG
241TGAGGTCCCC AAATATTGAC CAACTGGCAT CCCACAGCCT CCTCTTCCAG AATGCCTTTG
301CGCAGCAAGC AGTGTGCGCC CCGAGCCGCG TTTCTTTCCT CACTGGCAGG AGACCTGACA
361CCACCCGCCT GTACGACTTC AACTCCTACT GGAGGGTGCA CGCTGGAAAC TTCTCCACCA
421TCCCCCAGTA CTTCAAGGAG AATGGCTATG TGACCATGTC GGTGGGAAAA GTCTTTCACC
481CTGGGATATC TTCTAACCAT ACCGATGATT CTCCGTATAG CTGGTCTTTT CCACCTTATC
541ATCCTTCCTC TGAGAAGTAT GAAAACACTA AGACATGTCG AGGGCCAGAT GGAGAACTCC
601ATGCCAACCT GCTTTGCCCT GTGGATGTGC TGGATGTTCC CGAGGGCACC TTGCCTGACA
661AACAGAGCAC TGAGCAAGCC ATACAGTTGT TGGAAAAGAT GAAAACGTCA GCCAGTCCTT
721TCTTCCTGGC CGTTGGGTAT CATAAGCCAC ACATCCCCTT CAGATACCCC AAGGAATTTC
781AGAAGTTGTA TCCCTTGGAG AACATCACCC TGGCCCCCGA TCCCGAGGTC CCTGATGGCC
841TACCCCCTGT GGCCTACAAC CCCTGGATGG ACATCAGGCA ACGGGAAGAC GTCCAAGCCT
901TAAACATCAG TGTGCCGTAT GGTCCAATTC CTGTGGACTT TCAGGAGGAC CAAAGTTCCA
961CAGGTTTCAG ACTGAAGACT TCATCTACCA GAAAGTATAA GTACCCAACT TTCTTGTACA
1021AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)