Construct: ORF ccsbBroadEn_10924
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016301.1_s300c1, BRDN0000396910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ISG20 (3669)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3669 | ISG20 | interferon stimulated exonu... | NM_001303237.2 | 52% | 45.2% | (many diffs) |
| 2 | human | 3669 | ISG20 | interferon stimulated exonu... | XM_017022148.1 | 52% | 45.2% | (many diffs) |
| 3 | human | 3669 | ISG20 | interferon stimulated exonu... | NM_001303233.2 | 44.9% | 42.5% | (many diffs) |
| 4 | human | 3669 | ISG20 | interferon stimulated exonu... | NM_001303234.2 | 44.9% | 42.5% | (many diffs) |
| 5 | human | 3669 | ISG20 | interferon stimulated exonu... | NM_002201.6 | 44.9% | 42.5% | (many diffs) |
| 6 | human | 3669 | ISG20 | interferon stimulated exonu... | XM_005254899.2 | 44.9% | 42.5% | (many diffs) |
| 7 | human | 3669 | ISG20 | interferon stimulated exonu... | XM_006720488.3 | 44.9% | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 327
- ORF length:
- 261
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGGGAGCCGT GAGGTGGTGG CCATGGACTG CGAGATGGTG GGGCTGGGGC 121 CCCACCGGGA GAGTGGCCTG GCTCGTTGCA GCCTCGTGAA CGTCCACGGT GCTGTGCTGT 181 ACGACAAGTT CATCCGGCCT GAGGGAGAGA TCACCGATTA CAGAACCCGG GTCAGCGGGG 241 TCACCCCTCA GCACATGGTG GGGGCCACAC CATTTGCCGT GGCCAGGCTA GAGGTCCCCT 301 TCCCATCCTC TCCAACGGCA GCTGTGTGCC CAACTTTCTT GTACAAAGTt ggcattataa 361 gaaagcattg cttatcaatt tgttgcaacg aac