Construct: ORF ccsbBroadEn_10949

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013099.1_s300c1, BRDN0000397089
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMX1A (4009)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4009 LMX1A LIM homeobox transcription ... XM_011509538.3 33% 33.1% 1_606del;810T>C
2 human 4009 LMX1A LIM homeobox transcription ... NM_001174069.1 26% 26.1% 1_846del;1050T>C
3 human 4009 LMX1A LIM homeobox transcription ... NM_177398.4 26% 26.1% 1_846del;1050T>C
4 mouse 110648 Lmx1a LIM homeobox transcription ... NM_033652.5 23.6% 25.6% (many diffs)
5 mouse 110648 Lmx1a LIM homeobox transcription ... XM_006496611.2 23.6% 25.6% (many diffs)
6 mouse 110648 Lmx1a LIM homeobox transcription ... XM_017321684.1 23.6% 25.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
366
ORF length:
300
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGGAATCATG AACCCCTACA CGGCTCTGCC CACCCCACAG CAGCTCCTGG
121CCATCGAGCA GAGTGTCTAC AGCTCAGATC CCTTCCGACA GGGTCTCACC CCACCCCAGA
181TGCCTGGAGA CCACATGCAC CCTTATGGTG CCGAGCCCCT TTTCCATGAC CTGGATAGCG
241ACGACACCTC CCTCAGTAAC CTGGGTGACT GTTTCCTAGC AACCTCAGAA GCTGGGCCTC
301TGCAGTCCAG AGTGGGAAAC CCCATTGACC ATCTGTACTC CATGCAGAAT TCTTACTTCA
361CATCTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
421gttgcaacga ac

Download FASTA (ORF) (Full)