Construct: ORF ccsbBroadEn_10952
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016816.1_s300c1, BRDN0000390811
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRP1 (4035)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4035 | LRP1 | LDL receptor related protein 1 | NM_002332.3 | 6.3% | 6.1% | (many diffs) |
| 2 | human | 4035 | LRP1 | LDL receptor related protein 1 | XM_017019303.1 | 6.3% | 6.1% | (many diffs) |
| 3 | mouse | 16971 | Lrp1 | low density lipoprotein rec... | NM_008512.2 | 5.6% | 5.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 942
- ORF length:
- 876
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GACCCCGCCG TTGCTCCTGC TGCTGCCCCT GCTCTCAGCT CTGGTCGCGG 121 CGGCTATCGA CGCCCCTAAG ACTTGCAGCC CCAAGCAGTT TGCCTGCAGA GATCAAATAA 181 CCTGTATCTC AAAGGGCTGG CGGTGCGACG GTGAGAGGGA CTGCCCAGAC GGATCTGACG 241 AGGCCCCTGA GATTTGTCCA CAGAGTAAGG CCCAGCGATG CCAGCCAAAC GAGCATAACT 301 GCCTGGGTAC TGAGCTGTGT GTTCCCATGT CCCGCCTCTG CAATGGGGTC CAGGACTGCA 361 TGGACGGCTC AGATGAGGGG CCCCACTGCC GAGAGCTCCA AGGCAACTGC TCTCGCCTGG 421 GCTGCCAGCA CCATTGTGTC CCCACACTCG ATGGGCCCAC CTGCTACTGC AACAGCAGCT 481 TTCAGCTTCA GGCAGATGGC AAGACCTGCA AAGATTTTGA TGAGTGCTCA GTGTACGGCA 541 CCTGCAGCCA GCTATGCACC AACACAGACG GCTCCTTCAT ATGTGGCTGT GTTGAAGGAT 601 ACCTCCTGCA GCCGGATAAC CGCTCCTGCA AGGCCAAGAA CGAGCCAGTA GACCGGCCCC 661 CTGTGCTGTT GATAGCCAAC TCCCAGAACA TCTTGGCCAC GTACCTGAGT GGGGCCCAGG 721 TGTCTACCAT CACACCTACG AGCACGCGGC AGACCACAGC CATGGACTTC AGCTATGCCA 781 ACGAGACCGT ATGCTGGGTG CATGTTGGGG ACAGTGCTGC TCAGACGCAG CTCAAGTGTG 841 CCCGCATGCC TGGCCTAAAG GGCTTCGTGG ATGAGCACAC CATCAACATC TCCCTCAGTC 901 TGCACCTGTG TGTGTTTTCG AAATCACAAC AGGAAATGGG GTACCCAACT TTCTTGTACA 961 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac