Construct: ORF ccsbBroadEn_10958

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013103.1_s300c1, BRDN0000385492
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAP4 (4134)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4134 MAP4 microtubule associated prot... NM_002375.5 84.9% 84.9% 1665_2183del
2 human 4134 MAP4 microtubule associated prot... XM_017006402.1 84.8% 84.8% 1665_2183del;3451_3452insGC;3453_3454insC
3 human 4134 MAP4 microtubule associated prot... XM_024453529.1 83.7% 83.7% 223_273del;1716_2234del
4 human 4134 MAP4 microtubule associated prot... XM_017006400.2 83.6% 83.5% (many diffs)
5 human 4134 MAP4 microtubule associated prot... XM_017006405.1 83.5% 83.5% (many diffs)
6 human 4134 MAP4 microtubule associated prot... XM_024453530.1 82.9% 82.9% 221_222ins69;1596_2114del
7 human 4134 MAP4 microtubule associated prot... XM_011533719.2 82.8% 82.8% 223_273del;343_378del;1752_2270del
8 human 4134 MAP4 microtubule associated prot... XM_017006395.1 82.8% 82.7% (many diffs)
9 human 4134 MAP4 microtubule associated prot... XM_017006409.2 81.6% 81.6% 1665_2183del;2859_2860ins114
10 human 4134 MAP4 microtubule associated prot... XM_017006396.2 81.6% 81.6% (many diffs)
11 human 4134 MAP4 microtubule associated prot... XM_017006397.1 81.5% 81.4% (many diffs)
12 human 4134 MAP4 microtubule associated prot... XM_017006411.1 81.4% 81.4% 528_529ins123;1542_2060del
13 human 4134 MAP4 microtubule associated prot... XM_017006412.1 81.3% 81.2% (many diffs)
14 human 4134 MAP4 microtubule associated prot... NM_001134364.2 80.9% 78.7% (many diffs)
15 human 4134 MAP4 microtubule associated prot... XM_017006406.2 80.4% 80.4% 223_273del;1716_2234del;2910_2911ins114
16 human 4134 MAP4 microtubule associated prot... XM_017006401.1 80.2% 80.2% 223_273del;579_580ins123;1593_2111del
17 human 4134 MAP4 microtubule associated prot... XM_017006413.1 78.9% 78.9% 1665_2183del;2859_2860ins207
18 human 4134 MAP4 microtubule associated prot... XM_017006410.2 78.9% 78.9% (many diffs)
19 human 4134 MAP4 microtubule associated prot... XM_017006414.1 78.9% 78.8% (many diffs)
20 human 4134 MAP4 microtubule associated prot... XM_017006415.1 77.6% 77.6% 1665_2183del;2814_2815ins252
21 human 4134 MAP4 microtubule associated prot... XM_017006416.1 75.4% 75.4% 528_529ins123;1542_2060del;2736_2737ins207
22 human 4134 MAP4 microtubule associated prot... XM_024453527.1 43.3% 42.4% (many diffs)
23 human 4134 MAP4 microtubule associated prot... XM_024453528.1 43.3% 42.3% (many diffs)
24 human 4134 MAP4 microtubule associated prot... XM_011533705.1 42.3% 42.3% 223_273del;343_378del;1752_5654del
25 human 4134 MAP4 microtubule associated prot... XM_024453523.1 42% 42% 223_273del;343_378del;1752_5705del
26 human 4134 MAP4 microtubule associated prot... XM_011533703.2 42% 42% (many diffs)
27 human 4134 MAP4 microtubule associated prot... XM_011533708.2 41.7% 41.7% (many diffs)
28 human 4134 MAP4 microtubule associated prot... XM_011533704.2 41.4% 41.4% (many diffs)
29 human 4134 MAP4 microtubule associated prot... XM_017006391.1 41.4% 41.3% (many diffs)
30 human 4134 MAP4 microtubule associated prot... XM_024453524.1 40.7% 40.7% (many diffs)
31 human 4134 MAP4 microtubule associated prot... XM_024453525.1 40.7% 40.6% (many diffs)
32 human 4134 MAP4 microtubule associated prot... XM_011533709.2 40.4% 40.4% (many diffs)
33 human 4134 MAP4 microtubule associated prot... XM_017006392.1 40.4% 40.3% (many diffs)
34 human 4134 MAP4 microtubule associated prot... XM_024453526.1 40.1% 40.1% (many diffs)
35 human 4134 MAP4 microtubule associated prot... XM_011533718.1 39.3% 39.3% (many diffs)
36 human 4134 MAP4 microtubule associated prot... XR_002959529.1 37.1% (many diffs)
37 human 4134 MAP4 microtubule associated prot... XR_002959531.1 35.7% (many diffs)
38 human 4134 MAP4 microtubule associated prot... XR_002959532.1 35.3% (many diffs)
39 human 4134 MAP4 microtubule associated prot... XR_002959530.1 35.1% (many diffs)
40 human 4134 MAP4 microtubule associated prot... XR_002959533.1 34.4% (many diffs)
41 human 4134 MAP4 microtubule associated prot... XR_002959534.1 33.8% (many diffs)
42 human 4134 MAP4 microtubule associated prot... XR_002959519.1 25.9% (many diffs)
43 human 4134 MAP4 microtubule associated prot... XR_002959527.1 25.8% (many diffs)
44 human 4134 MAP4 microtubule associated prot... XR_002959525.1 25.7% (many diffs)
45 human 4134 MAP4 microtubule associated prot... XR_002959523.1 25.7% (many diffs)
46 human 4134 MAP4 microtubule associated prot... XR_002959521.1 25.6% (many diffs)
47 human 4134 MAP4 microtubule associated prot... XR_002959526.1 24.9% (many diffs)
48 human 4134 MAP4 microtubule associated prot... XR_002959524.1 24.8% (many diffs)
49 human 4134 MAP4 microtubule associated prot... XR_002959522.1 24.8% (many diffs)
50 human 4134 MAP4 microtubule associated prot... XR_002959520.1 24.7% (many diffs)
51 human 4134 MAP4 microtubule associated prot... XR_002959528.1 23.7% (many diffs)
52 human 4134 MAP4 microtubule associated prot... NM_030885.4 10% 9.9% 293_294delAA;295_296insGTCT;297_298ins2638
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3003
ORF length:
2937
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGACCTCAGT CTTGCAGATG CATTAACAGA ACCATCTCCA GACATTGAGG
121GAGAGATAAA GCGGGACTTC ATTGCCACAC TAGAGGCAGA GGCCTTTGAT GATGTTGTGG
181GAGAAACTGT TGGAAAAACA GACTATATTC CTCTCCTGGA TGTTGATGAG AAAACCGGGA
241ACTCAGAGTC AAAGAAGAAA CCGTGCTCAG AAACTAGCCA GATTGAAGAT ACTCCATCTT
301CTAAACCAAC ACTCCTAGCC AATGGTGGTC ATGGAGTAGA AGGGAGCGAT ACTACAGGGT
361CTCCAACTGA ATTCCTTGAA GAGAAAATGG CCTACCAGGA ATACCCAAAT AGCCAGAACT
421GGCCAGAAGA TACCAACTTT TGTTTCCAAC CTGAGCAAGT GGTCGATCCT ATCCAGACTG
481ATCCCTTTAA GATGTACCAT GATGATGACC TGGCAGATTT GGTCTTTCCC TCCAGTGCGA
541CAGCTGATAC TTCAATATTT GCAGGACAAA ATGATCCCTT GAAAGACAGT TACGGTATGT
601CTCCCTGCAA CACAGCTGTT GTACCTCAGG GGTGGTCTGT GGAAGCCTTA AACTCTCCAC
661ACTCAGAGTC CTTTGTTTCC CCAGAGGCTG TTGCAGAACC TCCTCAGCCA ACGGCAGTTC
721CCTTAGAGCT AGCCAAGGAG ATAGAAATGG CATCAGAAGA GAGGCCACCA GCACAAGCAT
781TGGAAATAAT GATGGGACTG AAGACTACTG ACATGGCACC ATCTAAAGAA ACAGAGATGG
841CCCTCGCCAA GGACATGGCA CTAGCTACAA AAACCGAGGT GGCATTGGCT AAAGATATGG
901AATCACCCAC CAAATTAGAT GTGACACTGG CCAAGGACAT GCAGCCATCC ATGGAATCAG
961ATATGGCCCT AGTCAAGGAC ATGGAACTAC CCACAGAAAA AGAAGTGGCC CTGGTTAAGG
1021ATGTCAGATG GCCCACAGAA ACAGATGTAT CTTCAGCCAA GAATGTGGTA CTGCCCACAG
1081AAACAGAGGT AGCCCCAGCC AAGGATGTGA CACTGTTGAA AGAAACAGAG AGGGCATCTC
1141CTATAAAAAT GGACTTAGCC CCTTCCAAGG ACATGGGACC ACCCAAAGAA AACAAGAAAG
1201AAACAGAGAG GGCATCTCCT ATAAAAATGG ACTTGGCTCC TTCCAAGGAC ATGGGACCAC
1261CCAAAGAAAA CAAGATAGTC CCAGCCAAGG ATTTGGTATT ACTCTCAGAA ATAGAGGTGG
1321CACAGGCTAA TGACATTATA TCATCCACAG AAATATCCTC TGCTGAGAAG GTGGCTTTGT
1381CCTCAGAAAC AGAGGTAGCC CTGGCCAGGG ACATGACACT GCCCCCGGAA ACCAACGTGA
1441TCTTGACCAA GGATAAAGCA CTACCTTTAG AAGCAGAGGT GGCCCCAGTC AAGGACATGG
1501CTCAACTCCC AGAAACAGAA ATAGCCCCGG CCAAGGATGT GGCTCCGTCC ACAGTAAAAG
1561AAGTGGGCTT GTTGAAGGAC ATGTCTCCAC TATCAGAAAC AGAAATGGCT CTGGGCAAGG
1621ATGTGACTCC ACCTCCAGAA ACAGAAGTAG TTCTCATCAA GAACGTATGT CTGCCTCCAG
1681AAATGGAGGT GGCCCTGACT GAGGATCAGG TCCCAGCCCT CAAAACAGAA GCTCCCACCA
1741CCATTGGTGG GTTGAATAAA AAACCCATGA GCCTTGCTTC AGGCTTAGTG CCAGCTGCCC
1801CACCCAAACG CCCTGCCGTC GCCTCTGCCA GGCCTTCCAT CTTACCTTCA AAAGACGTGA
1861AGCCAAAGCC CATTGCAGAT GCAAAGGCTC CTGAGAAGCG GGCCTCACCA TCCAAGCCAG
1921CTTCTGCCCC AGCCTCCAGA TCTGGGTCCA AGAGCACTCA GACTGTTGCA AAAACCACAA
1981CAGCTGCTGC TGTTGCCTCA ACTGGCCCAA GCAGTAGGAG CCCCTCCACG CTCCTGCCCA
2041AGAAGCCCAC TGCCATTAAG ACTGAGGGAA AACCTGCAGA AGTCAAGAAG ATGACTGCAA
2101AGTCTGTACC AGCTGACTTG AGTCGCCCAA AGAGCACCTC CACCAGTTCC ATGAAGAAAA
2161CCACCACTCT CAGTGGGACA GCCCCCGCTG CAGGGGTGGT TCCCAGCCGA GTCAAGGCCA
2221CACCCATGCC CTCCCGGCCC TCCACAACTC CTTTCATAGA CAAGAAGCCC ACCTCGGCCA
2281AACCCAGCTC CACCACCCCC CGGCTCAGCC GCCTGGCCAC CAATACTTCT GCTCCTGATC
2341TGAAGAATGT CCGCTCCAAG GTTGGCTCCA CGGAAAACAT CAAGCATCAG CCTGGAGGAG
2401GCCGGGCCAA AGTAGAGAAA AAAACAGAGG CAGCTGCTAC AACCCGAAAG CCTGAATCTA
2461ATGCAGTCAC TAAAACAGCC GGCCCAATTG CAAGTGCACA GAAACAACCT GCGGGGAAAG
2521TCCAGATAGT CTCCAAAAAA GTGAGCTACA GCCATATTCA GTCCAAGTGT GGTTCCAAGG
2581ACAATATTAA GCATGTCCCT GGAGGTGGTA ATGTTCAGAT TCAGAACAAG AAAGTGGACA
2641TCTCTAAGGT CTCCTCCAAG TGTGGGTCTA AGGCTAACAT CAAGCACAAG CCTGGTGGAG
2701GAGATGTCAA GATTGAAAGT CAGAAGTTGA ACTTCAAGGA GAAGGCCCAG GCCAAGGTGG
2761GATCCCTCGA TAATGTGGGC CACCTACCTG CAGGAGGTGC TGTGAAGACT GAGGGCGGTG
2821GCAGCGAGGC TCCTCTGTGT CCGGGTCCCC CTGCTGGGGA GGAGCCGGCC ATCTCTGAGG
2881CAGCGCCTGA AGCTGGCGCC CCCACTTCAG CCAGTGGCCT CAATGGCCAC CCCACCCTGT
2941CAGGGGGTGG TGACCAAAGG GAGGCCCAGA CCTTGGACAG CCAGATCCAG GAGACAAGCA
3001TCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
3061gcaacgaac

Download FASTA (ORF) (Full)

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