Construct: ORF ccsbBroadEn_10971
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003310.1_s300c1, BRDN0000385344
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLLT6 (4302)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4302 | MLLT6 | MLLT6, PHD finger containing | NM_005937.4 | 42.2% | 42.2% | 1_1893del |
| 2 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | NM_139311.2 | 38.1% | 40.5% | (many diffs) |
| 3 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533333.2 | 37.1% | 39.4% | (many diffs) |
| 4 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533332.2 | 37% | 39.4% | (many diffs) |
| 5 | mouse | 246198 | Mllt6 | myeloid/lymphoid or mixed-l... | XM_006533335.2 | 26.4% | 18.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1452
- ORF length:
- 1386
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG TGCCGTTAAT CCCCTCCTCT CCCAAGCTGA GAGCAGCCAC ACAGAGCCAG 121 ACCTGGAGGA CTGCAGCTTC CGGTGTCGGG GGACCTCCCC TCAGGAGAGT CTGTCTTCCA 181 TGTCCCCCAT CAGCAGCCTC CCCGCACTCT TCGACCAGAC AGCCTCTGCA CCCTGTGGGG 241 GCGGCCAGTT AGACCCGGCG GCCCCAGGGA CGACTAACAT GGAGCAGCTT CTGGAGAAGC 301 AGGGCGACGG GGAGGCCGGC GTCAACATCG TGGAGATGCT GAAGGCGCTG CACGCGCTGC 361 AGAAGGAGAA CCAGCGGCTG CAAGAGCAGA TCCTGAGCCT GACGGCCAAA AAGGAGCGGC 421 TGCAGATTCT CAACGTGCAG CTCTCTGTGC CCTTCCCTGC CCTGCCTGCT GCCCTGCCTG 481 CCGCCAACGG CCCTGTCCCT GGGCCCTATG GCCTGCCTCC CCAAGCCGGC AGCAGCGACT 541 CCTTGAGCAC CAGCAAGAGC CCTCCGGGAA AGAGCAGCCT CGGCCTGGAC AACTCGCTGT 601 CCACTTCTTC TGAGGACCCA CACTCAGGCT GCCCGAGCCG CAGCAGCTCG TCGCTGTCCT 661 TCCACAGCAC GCCCCCACCG CTGCCCCTCC TCCAGCAGAG CCCTGCCACT CTGCCCCTGG 721 CCCTGCCTGG GGCCCCTGCC CCACTCCCGC CCCAGCCGCA GAACGGGTTG GGCCGGGCAC 781 CCGGGGCAGC GGGGCTGGGG GCCATGCCCA TGGCTGAGGG GCTGTTGGGG GGGCTGGCAG 841 GCAGTGGGGG CCTGCCCCTC AATGGGCTCC TTGGGGGGTT GAATGGGGCC GCTGCCCCCA 901 ACCCCGCAAG CTTGAGCCAG GCTGGCGGGG CCCCCACGCT GCAGCTGCCA GGCTGTCTCA 961 ACAGCCTTAC AGAGCAGCAG AGACATCTCC TTCAGCAGCA AGAGCAGCAG CTCCAGCAAC 1021 TCCAGCAGCT CCTGGCCTCC CCGCAGCTGA CCCCGGAACA CCAGACTGTT GTCTACCAGA 1081 TGATCCAGCA GATCCAGCAG AAACGGGAGC TGCAGCGCCT GCAGATGGCT GGGGGCTCCC 1141 AGCTGCCCAT GGCCAGCCTG CTGGCAGGAA GCTCCACCCC GCTGCTGTCT GCGGGTACCC 1201 CTGGCCTGCT GCCCACAGCG TCTGCTCCAC CCCTGCTGCC CGCTGGAGCC CTAGTGGCTC 1261 CCTCGCTTGG CAACAACACA AGTCTCATGG CCGCAGCAGC TGCAGCTGCA GCAGTAGCAG 1321 CAGCAGGCGG ACCTCCAGTC CTCACTGCCC AGACCAACCC CTTCCTCAGC CTGTCGGGAG 1381 CAGAGGGCAG TGGCGGTGGC CCCAAAGGAG GGACCGCTGA CAAAGGAGCC TCAGCCAACC 1441 AGGAAAAAGG CTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1501 caatttgttg caacgaac