Transcript: Human NM_005937.4

Homo sapiens MLLT6, PHD finger containing (MLLT6), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
MLLT6 (4302)
Length:
7839
CDS:
361..3642

Additional Resources:

NCBI RefSeq record:
NM_005937.4
NBCI Gene record:
MLLT6 (4302)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005937.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358813 AGCCATAGCCTGAGTCATAAA pLKO_005 1273 CDS 100% 13.200 18.480 N MLLT6 n/a
2 TRCN0000358814 AGTACTGCGGCTACTGCAAAT pLKO_005 875 CDS 100% 10.800 8.640 N MLLT6 n/a
3 TRCN0000358815 CAGGCATCTACACCAGTAATA pLKO_005 2009 CDS 100% 13.200 9.240 N MLLT6 n/a
4 TRCN0000358816 CATTGAAGAGGACTGATAATG pLKO_005 581 CDS 100% 13.200 9.240 N MLLT6 n/a
5 TRCN0000019902 GCATTGAAGAGGACTGATAAT pLKO.1 580 CDS 100% 13.200 9.240 N MLLT6 n/a
6 TRCN0000019901 CCTGAGTCATAAAGGGAAGAA pLKO.1 1281 CDS 100% 4.950 3.465 N MLLT6 n/a
7 TRCN0000019900 CCAGACTGTTGTCTACCAGAT pLKO.1 3249 CDS 100% 4.050 2.835 N MLLT6 n/a
8 TRCN0000019899 CGGCTACTGCAAATACCACTT pLKO.1 882 CDS 100% 4.050 2.835 N MLLT6 n/a
9 TRCN0000126606 CGAAAGGACAAAGAACGCCTT pLKO.1 1084 CDS 100% 2.160 1.512 N Mllt6 n/a
10 TRCN0000019903 CGGCGTCAACATCGTGGAGAT pLKO.1 2505 CDS 100% 1.350 0.945 N MLLT6 n/a
11 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 5584 3UTR 100% 4.950 2.475 Y GJD4 n/a
12 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 5584 3UTR 100% 4.950 2.475 Y C9orf85 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005937.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10971 pDONR223 100% 42.2% 42.2% None 1_1893del n/a
2 ccsbBroad304_10971 pLX_304 0% 42.2% 42.2% V5 1_1893del n/a
3 TRCN0000466712 GCATATGGGCAGTAATGCTACTTC pLX_317 33.5% 42.2% 42.2% V5 1_1893del n/a
4 ccsbBroadEn_15500 pDONR223 0% 28.4% 25.4% None (many diffs) n/a
5 ccsbBroad304_15500 pLX_304 0% 28.4% 25.4% V5 (many diffs) n/a
6 TRCN0000468129 CTAAGGAAGTGTCAACTCATCATG pLX_317 46.3% 28.4% 25.4% V5 (many diffs) n/a
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