Construct: ORF ccsbBroadEn_11027
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000938.1_s300c1, BRDN0000386077
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PEX7 (5191)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5191 | PEX7 | peroxisomal biogenesis fact... | NM_000288.4 | 82.3% | 78.1% | (many diffs) |
| 2 | human | 5191 | PEX7 | peroxisomal biogenesis fact... | XM_005267019.4 | 70% | 65.1% | (many diffs) |
| 3 | human | 5191 | PEX7 | peroxisomal biogenesis fact... | XM_017010934.2 | 68.4% | 62% | (many diffs) |
| 4 | human | 5191 | PEX7 | peroxisomal biogenesis fact... | XM_006715502.2 | 52.2% | 48.4% | (many diffs) |
| 5 | mouse | 18634 | Pex7 | peroxisomal biogenesis fact... | NM_008822.2 | 72.1% | 69.8% | (many diffs) |
| 6 | mouse | 18634 | Pex7 | peroxisomal biogenesis fact... | NM_001161825.1 | 64.5% | 62.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 906
- ORF length:
- 840
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TGCGGTGTGC GGTGGAGCGG CGCGGATGCT GCGGACGCCG GGACGCCACG 121 GCTACGCCGC CGAGTTCTCC CCGTACCTGC CGGGCCGCCT GGCCTGCGCC ACCGCGCAGC 181 ACTACGGCAT CGCGGGCTGT GGAACCCTAC TAATATTGGA TCCAGATGAA GCTGGGCTAA 241 GGCTTTTTAG AAGCTTTGAC TGGAATGATG GTTTGTTTGA TGTGACTTGG AGTGAGAACA 301 ACGAACATGT CCTCATCACC TGTAGTGGCG ATGGCTCGCT GCAGCTCTGG GACACTGCCA 361 AAGCTGCAGG GCCACTGCAA GTCTATAAAG AACACGCTCA GGAGGTGTAT AGTGTTGATT 421 GGAGCCAAAC CAGAGGTGAA CAGCTTGTGG TGTCTGGCTC ATGGGATCAA ACTGTCAAAT 481 TGTGGGATCC AACTGTTGGA AAGTCTCTGT GCACCTTTAG AGGCCATGAA AGTATTATTT 541 ATAGCACAAT CTGGTCTCCC CACATCCCTG GTTGTTTTGC TTCAGCCTCA GGTGATCAGA 601 CTCTGAGAAT ATGGGATGTG AAGGCAGCAG GAGTAAGAAT CGTGATTCCT GCACATCAGG 661 CAGAAATCTT GAGTTGTGAC TGGTGTAAAT ACAATGAGAA TTTGCTGGTG ACCGGGGCGG 721 TTGACTGTAG TTTGAGAGGC TGGGACTTAA GGAATGTACG ACAACCAGTG TTTGAACTTC 781 TTGGTCATAC CTATGCTATT AGGAGGGTGA AAATGGAGTC TTGCCCTGTC ACCCAGACAC 841 GATCTCAGCT CACTGCAACC TCTGCCTTCT GGGTTCAAGC TGTTCTCCTG CCTCAGCCTA 901 CTGAGTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 961 gttgcaacga ac