Construct: ORF ccsbBroadEn_11048
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016735.1_s300c1, BRDN0000395814
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PPARA (5465)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5465 | PPARA | peroxisome proliferator act... | NM_001001928.3 | 53.5% | 49.5% | (many diffs) |
| 2 | human | 5465 | PPARA | peroxisome proliferator act... | NM_001362872.2 | 53.5% | 49.5% | (many diffs) |
| 3 | human | 5465 | PPARA | peroxisome proliferator act... | NM_001362873.1 | 53.5% | 49.5% | (many diffs) |
| 4 | human | 5465 | PPARA | peroxisome proliferator act... | NM_005036.6 | 53.5% | 49.5% | (many diffs) |
| 5 | human | 5465 | PPARA | peroxisome proliferator act... | XM_005261656.3 | 53.5% | 49.5% | (many diffs) |
| 6 | human | 5465 | PPARA | peroxisome proliferator act... | XM_006724270.3 | 53.5% | 49.5% | (many diffs) |
| 7 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530239.2 | 53.5% | 49.5% | (many diffs) |
| 8 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530240.2 | 53.5% | 49.5% | (many diffs) |
| 9 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530241.2 | 53.5% | 49.5% | (many diffs) |
| 10 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530242.2 | 53.5% | 49.5% | (many diffs) |
| 11 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530243.2 | 53.5% | 49.5% | (many diffs) |
| 12 | human | 5465 | PPARA | peroxisome proliferator act... | XR_937870.2 | 50.1% | (many diffs) | |
| 13 | human | 5465 | PPARA | peroxisome proliferator act... | XR_937869.2 | 49.9% | (many diffs) | |
| 14 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530244.2 | 24.7% | 15.2% | (many diffs) |
| 15 | human | 5465 | PPARA | peroxisome proliferator act... | XM_011530245.2 | 24.7% | 15.2% | (many diffs) |
| 16 | human | 5465 | PPARA | peroxisome proliferator act... | XM_017028839.1 | 24.7% | 15.2% | (many diffs) |
| 17 | human | 5465 | PPARA | peroxisome proliferator act... | XM_024452252.1 | 24.7% | 15.2% | (many diffs) |
| 18 | human | 5465 | PPARA | peroxisome proliferator act... | XR_001755253.1 | 7.4% | (many diffs) | |
| 19 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520624.3 | 44.7% | 45.7% | (many diffs) |
| 20 | mouse | 19013 | Ppara | peroxisome proliferator act... | NM_001113418.1 | 44.6% | 45.6% | (many diffs) |
| 21 | mouse | 19013 | Ppara | peroxisome proliferator act... | NM_011144.6 | 44.6% | 45.6% | (many diffs) |
| 22 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520619.1 | 44.6% | 45.6% | (many diffs) |
| 23 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520620.3 | 44.6% | 45.6% | (many diffs) |
| 24 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520621.3 | 44.6% | 45.6% | (many diffs) |
| 25 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520622.3 | 44.6% | 45.6% | (many diffs) |
| 26 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_006520623.3 | 44.6% | 45.6% | (many diffs) |
| 27 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_011245516.2 | 44.6% | 45.6% | (many diffs) |
| 28 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_011245517.2 | 44.6% | 45.6% | (many diffs) |
| 29 | mouse | 19013 | Ppara | peroxisome proliferator act... | XM_011245519.2 | 44.6% | 45.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 840
- ORF length:
- 774
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGACACGGAA AGCCCACTCT GCCCCCTCTC CCCACTCGAG GCCGGCGATC 121 TAGAGAGCCC GTTATCTGAA GAGTTCCTGC AAGAAATGGG AAACATCCAA GAGATTTCGC 181 AATCCATCGG CGAGGATAGT TCTGGAAGCT TTGGCTTTAC GGAATACCAG TATTTAGGAA 241 GCTGTCCTGG CTCAGATGGC TCGGTCATCA CGGACACGCT TTCACCAGCT TCGAGCCCCT 301 CCTCGGTGAC TTATCCTGTG GTCCCCGGCA GCGTGGACGA GTCTCCCAGT GGAGCATTGA 361 ACATCGAATG TAGAATCTGC GGGGACAAGG CCTCAGGCTA TCATTACGGA GTCCACGCGT 421 GTGAAGGCTG CAAGGGCTTC TTTCGGCGAA CGATTCGACT CAAGCTGGTG TATGACAAGT 481 GCGACCGCAG CTGCAAGATC CAGAAAAAGA ACAGAAACAA ATGCCAGTAT TGTCGATTTC 541 ACAAGTGCCT TTCTGTCGGG ATGTCACACA ACGCGATTCG TTTTGGACGA ATGCCAAGAT 601 CTGAGAAAGC AAAACTGAAA GCAGAAATTC TTACCTGTGA ACATGACATA GAAGATTCTG 661 AAACTGCAGA TCTCAAATCT CTGGCCAAGA GAATCTACGA GGCCTACTTG AAGAACTTCA 721 ACATGAACAA GGTCAAAGCC CGGGTCATCC TCTCAGGAAA GGCCAGTAAC AATCCAGTAG 781 GTGTTTGCGG CTGTTCTGGG TTCTCTTGGC AACATGGAAC CAGTGTCGTA GAGGACGATT 841 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 901 acgaac