Construct: ORF ccsbBroadEn_11076
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015906.1_s300c1, BRDN0000390470
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRB (5787)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5787 | PTPRB | protein tyrosine phosphatas... | XR_944651.1 | 55.7% | (many diffs) | |
| 2 | human | 5787 | PTPRB | protein tyrosine phosphatas... | NM_001330204.2 | 36.2% | 36.2% | 935G>A;963A>T;2314_6381del |
| 3 | human | 5787 | PTPRB | protein tyrosine phosphatas... | XM_011538614.1 | 35.9% | 35.9% | 935G>A;963A>T;2314_6426del |
| 4 | human | 5787 | PTPRB | protein tyrosine phosphatas... | NM_001109754.4 | 34.7% | 34.7% | 935G>A;963A>T;2314_6645del |
| 5 | human | 5787 | PTPRB | protein tyrosine phosphatas... | XM_006719528.1 | 34.5% | 34.5% | 935G>A;963A>T;2314_6690del |
| 6 | human | 5787 | PTPRB | protein tyrosine phosphatas... | NM_001206972.3 | 25.7% | 25.3% | (many diffs) |
| 7 | human | 5787 | PTPRB | protein tyrosine phosphatas... | NM_002837.6 | 24.7% | 24.3% | (many diffs) |
| 8 | human | 5787 | PTPRB | protein tyrosine phosphatas... | XM_006719529.4 | 24.5% | 24.2% | (many diffs) |
| 9 | human | 5787 | PTPRB | protein tyrosine phosphatas... | NM_001206971.3 | 20.6% | 20.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2379
- ORF length:
- 2313
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCTGAATTT TACATGGTGA TTCTTACCTG CTTGATCTTC AGGAACTCAG 121 AAGGGTTTCA GATTGTCCAT GTCCAGAAAC AACAGTGTCT TTTCAAAAAT GAGAAAGTGG 181 TCGTGGGCTC ATGCAACAGG ACCATCCAGA ACCAGCAGTG GATGTGGACT GAGGATGAAA 241 AGCTCCTTCA TGTTAAATCT GCACTGTGCT TGGCCATCTC CAACTCTTCC CGCGGCCCCT 301 CCCGCTCAGC CATCTTGGAC CGCTGTTCCC AGGCACCCCG ATGGACCTGC TATGATCAGG 361 AAGGCTTCCT TGAGGTGGAA AATGCCTCTC TCTTTCTCCA GAAACAAGGC TCCAGAGTAG 421 TGGTCAAGAA GGCCAGGAAA TACCTCCATA GCTGGATGAA AATAGATGTC AACAAGGAGG 481 GAAAACTGGT CAATGAAAGC CTCTGTTTAC AAAAAGCTGG CCTGGGAGCA GAAGTTTCGG 541 TGAGGAGCAC TAGAAACACG GCTCCACCCC AGATTCTCAC TACCTTTAAT GCAGTTCCAG 601 ATGGCCTGGT ATTCCTTATT AGGAATACCA CAGAGGCCTT CATCAGAAAT GCTGCAGAAA 661 ACTACAGCCA AAACAGCAGC GAGAGGCAGC ATCCCAATCT GCACATGACT GGAATTACAG 721 ACACATCATG GGTTTTGTCG ACTACTCAGC CCTTCTCCAG CACCACTGAA GAGACTGGAC 781 TGGCGGAGCC AGAGAGATGT AACTTCACCC TGGCGGAGTC CAAGGCCTCC AGCCATTCTG 841 TGTCTATCCA GTGGAGAATT TTGGGCTCAC CCTGTAACTT TAGCCTCATC TATAGCAGTG 901 ACACCCTGGG GGCCGCGTTG TGCCCTACCT TTCGGATAGA CAACACCACA TACGGATGTA 961 ACCTTCAAGA TTTACAAGCA GGAACCATCT ATAACTTCAA GATTATTTCT CTGGATGAAG 1021 AGAGAACTGT GGTCTTGCAA ACAGATCCTT TACCTCCTGC TAGGTTTGGA GTCAGTAAAG 1081 AGAAGACGAC TTCAACCAGC TTGCATGTTT GGTGGACTCC TTCTTCCGGA AAAGTCACCT 1141 CATATGAGGT GCAATTATTT GATGAAAATA ACCAAAAGAT ACAGGGGGTT CAAATTCAAG 1201 AAAGTACTTC ATGGAATGAA TACACTTTTT TCAATCTCAC TGCTGGTAGT AAATACAATA 1261 TTGCCATCAC AGCTGTTTCT GGAGGAAAAC GTTCTTTTTC AGTTTATACC AATGGATCAA 1321 CAGTGCCATC TCCAGTGAAA GATATTGGTA TTTCCACAAA AGCCAATTCT CTCCTGATTT 1381 CCTGGTCCCA TGGTTCTGGG AATGTGGAAC GATACCGGCT GATGCTAATG GATAAAGGGA 1441 TCCTAGTTCA TGGCGGTGTT GTGGACAAAC ATGCTACTTC CTATGCTTTT CACGGGCTGA 1501 CCCCTGGCTA CCTCTACAAC CTCACTGTTA TGACTGAGGC TGCAGGGCTG CAAAACTACA 1561 GGTGGAAACT AGTCAGGACA GCCCCCATGG AAGTCTCAAA TCTGAAGGTG ACAAATGATG 1621 GCAGTTTGAC CTCTCTAAAA GTCAAATGGC AAAGACCTCC TGGAAATGTG GATTCTTACA 1681 ATATCACCCT GTCTCACAAA GGGACCATCA AGGAATCCAG AGTATTAGCA CCTTGGATTA 1741 CTGAAACTCA CTTTAAAGAG TTAGTCCCCG GTCGACTTTA TCAAGTTACT GTCAGCTGTG 1801 TCTCTGGTGA ACTGTCTGCT CAGAAGATGG CAGTGGGCAG AACATTTCCA GACAAAGTTG 1861 CAAACCTGGA GGCAAACAAT AATGGCAGGA TGAGGTCTCT TGTAGTGAGC TGGTCGCCCC 1921 CTGCTGGAGA CTGGGAGCAG TATCGGATCC TACTCTTCAA TGATTCTGTG GTGCTGCTCA 1981 ACATCACTGT GGGAAAGGAA GAAACACAGT ATGTCATGGA TGACACGGGG CTCGTACCGG 2041 GAAGACAGTA TGAGGTGGAA GTCATTGTTG AGAGTGGAAA TTTGAAGAAT TCTGAGCGTT 2101 GCCAAGGCAG GACAGTCCCC CTGGCTGTCC TCCAGCTTCG TGTCAAACAT GCCAATGAAA 2161 CCTCACTGAG TATCATGTGG CAGACCCCTG TAGCAGAATG GGAGAAATAC ATCATTTCCC 2221 TAGCTGACAG AGACCTCTTA CTGATCCACA AGTCACTCTC CAAAGATGCC AAAGAATTCA 2281 CTTTTACTGA CCTGGTGCCT GGACGAAAAT ACATGGCTAC AGTCACCAGT ATTAGTGGAG 2341 ACTTAAAAAA TTCCTCTTCA GTAAAAGGAA GAACAGTGTA CCCAACTTTC TTGTACAAAG 2401 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac