Construct: ORF ccsbBroadEn_11076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015906.1_s300c1, BRDN0000390470
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRB (5787)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5787 PTPRB protein tyrosine phosphatas... XR_944651.1 55.7% (many diffs)
2 human 5787 PTPRB protein tyrosine phosphatas... NM_001330204.2 36.2% 36.2% 935G>A;963A>T;2314_6381del
3 human 5787 PTPRB protein tyrosine phosphatas... XM_011538614.1 35.9% 35.9% 935G>A;963A>T;2314_6426del
4 human 5787 PTPRB protein tyrosine phosphatas... NM_001109754.4 34.7% 34.7% 935G>A;963A>T;2314_6645del
5 human 5787 PTPRB protein tyrosine phosphatas... XM_006719528.1 34.5% 34.5% 935G>A;963A>T;2314_6690del
6 human 5787 PTPRB protein tyrosine phosphatas... NM_001206972.3 25.7% 25.3% (many diffs)
7 human 5787 PTPRB protein tyrosine phosphatas... NM_002837.6 24.7% 24.3% (many diffs)
8 human 5787 PTPRB protein tyrosine phosphatas... XM_006719529.4 24.5% 24.2% (many diffs)
9 human 5787 PTPRB protein tyrosine phosphatas... NM_001206971.3 20.6% 20.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2379
ORF length:
2313
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGCTGAATTT TACATGGTGA TTCTTACCTG CTTGATCTTC AGGAACTCAG
121AAGGGTTTCA GATTGTCCAT GTCCAGAAAC AACAGTGTCT TTTCAAAAAT GAGAAAGTGG
181TCGTGGGCTC ATGCAACAGG ACCATCCAGA ACCAGCAGTG GATGTGGACT GAGGATGAAA
241AGCTCCTTCA TGTTAAATCT GCACTGTGCT TGGCCATCTC CAACTCTTCC CGCGGCCCCT
301CCCGCTCAGC CATCTTGGAC CGCTGTTCCC AGGCACCCCG ATGGACCTGC TATGATCAGG
361AAGGCTTCCT TGAGGTGGAA AATGCCTCTC TCTTTCTCCA GAAACAAGGC TCCAGAGTAG
421TGGTCAAGAA GGCCAGGAAA TACCTCCATA GCTGGATGAA AATAGATGTC AACAAGGAGG
481GAAAACTGGT CAATGAAAGC CTCTGTTTAC AAAAAGCTGG CCTGGGAGCA GAAGTTTCGG
541TGAGGAGCAC TAGAAACACG GCTCCACCCC AGATTCTCAC TACCTTTAAT GCAGTTCCAG
601ATGGCCTGGT ATTCCTTATT AGGAATACCA CAGAGGCCTT CATCAGAAAT GCTGCAGAAA
661ACTACAGCCA AAACAGCAGC GAGAGGCAGC ATCCCAATCT GCACATGACT GGAATTACAG
721ACACATCATG GGTTTTGTCG ACTACTCAGC CCTTCTCCAG CACCACTGAA GAGACTGGAC
781TGGCGGAGCC AGAGAGATGT AACTTCACCC TGGCGGAGTC CAAGGCCTCC AGCCATTCTG
841TGTCTATCCA GTGGAGAATT TTGGGCTCAC CCTGTAACTT TAGCCTCATC TATAGCAGTG
901ACACCCTGGG GGCCGCGTTG TGCCCTACCT TTCGGATAGA CAACACCACA TACGGATGTA
961ACCTTCAAGA TTTACAAGCA GGAACCATCT ATAACTTCAA GATTATTTCT CTGGATGAAG
1021AGAGAACTGT GGTCTTGCAA ACAGATCCTT TACCTCCTGC TAGGTTTGGA GTCAGTAAAG
1081AGAAGACGAC TTCAACCAGC TTGCATGTTT GGTGGACTCC TTCTTCCGGA AAAGTCACCT
1141CATATGAGGT GCAATTATTT GATGAAAATA ACCAAAAGAT ACAGGGGGTT CAAATTCAAG
1201AAAGTACTTC ATGGAATGAA TACACTTTTT TCAATCTCAC TGCTGGTAGT AAATACAATA
1261TTGCCATCAC AGCTGTTTCT GGAGGAAAAC GTTCTTTTTC AGTTTATACC AATGGATCAA
1321CAGTGCCATC TCCAGTGAAA GATATTGGTA TTTCCACAAA AGCCAATTCT CTCCTGATTT
1381CCTGGTCCCA TGGTTCTGGG AATGTGGAAC GATACCGGCT GATGCTAATG GATAAAGGGA
1441TCCTAGTTCA TGGCGGTGTT GTGGACAAAC ATGCTACTTC CTATGCTTTT CACGGGCTGA
1501CCCCTGGCTA CCTCTACAAC CTCACTGTTA TGACTGAGGC TGCAGGGCTG CAAAACTACA
1561GGTGGAAACT AGTCAGGACA GCCCCCATGG AAGTCTCAAA TCTGAAGGTG ACAAATGATG
1621GCAGTTTGAC CTCTCTAAAA GTCAAATGGC AAAGACCTCC TGGAAATGTG GATTCTTACA
1681ATATCACCCT GTCTCACAAA GGGACCATCA AGGAATCCAG AGTATTAGCA CCTTGGATTA
1741CTGAAACTCA CTTTAAAGAG TTAGTCCCCG GTCGACTTTA TCAAGTTACT GTCAGCTGTG
1801TCTCTGGTGA ACTGTCTGCT CAGAAGATGG CAGTGGGCAG AACATTTCCA GACAAAGTTG
1861CAAACCTGGA GGCAAACAAT AATGGCAGGA TGAGGTCTCT TGTAGTGAGC TGGTCGCCCC
1921CTGCTGGAGA CTGGGAGCAG TATCGGATCC TACTCTTCAA TGATTCTGTG GTGCTGCTCA
1981ACATCACTGT GGGAAAGGAA GAAACACAGT ATGTCATGGA TGACACGGGG CTCGTACCGG
2041GAAGACAGTA TGAGGTGGAA GTCATTGTTG AGAGTGGAAA TTTGAAGAAT TCTGAGCGTT
2101GCCAAGGCAG GACAGTCCCC CTGGCTGTCC TCCAGCTTCG TGTCAAACAT GCCAATGAAA
2161CCTCACTGAG TATCATGTGG CAGACCCCTG TAGCAGAATG GGAGAAATAC ATCATTTCCC
2221TAGCTGACAG AGACCTCTTA CTGATCCACA AGTCACTCTC CAAAGATGCC AAAGAATTCA
2281CTTTTACTGA CCTGGTGCCT GGACGAAAAT ACATGGCTAC AGTCACCAGT ATTAGTGGAG
2341ACTTAAAAAA TTCCTCTTCA GTAAAAGGAA GAACAGTGTA CCCAACTTTC TTGTACAAAG
2401Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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