Construct: ORF ccsbBroadEn_11191
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016144.1_s300c1, BRDN0000389927
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TLE3 (7090)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_001282980.2 | 98.2% | 98.1% | (many diffs) |
| 2 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_006720665.4 | 97.9% | 97.9% | (many diffs) |
| 3 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_001282979.2 | 97.8% | 97.8% | (many diffs) |
| 4 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521980.3 | 97.7% | 97.6% | (many diffs) |
| 5 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_005078.4 | 97.6% | 97.5% | (many diffs) |
| 6 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_001105192.3 | 97.2% | 97.1% | (many diffs) |
| 7 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521978.3 | 96.9% | 96.9% | (many diffs) |
| 8 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_001282981.1 | 96.8% | 96.9% | (many diffs) |
| 9 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_005254633.3 | 96.6% | 96.6% | (many diffs) |
| 10 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_005254623.4 | 96.6% | 96.5% | (many diffs) |
| 11 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521977.3 | 96.4% | 96.4% | (many diffs) |
| 12 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521976.3 | 96.3% | 96.3% | (many diffs) |
| 13 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_020908.3 | 96% | 96% | (many diffs) |
| 14 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_005254622.5 | 95.9% | 95.9% | (many diffs) |
| 15 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_005254628.4 | 95.4% | 95.4% | (many diffs) |
| 16 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_005254625.4 | 94.8% | 94.8% | (many diffs) |
| 17 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521981.2 | 92.9% | 91.1% | (many diffs) |
| 18 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521979.3 | 91.7% | 91.8% | (many diffs) |
| 19 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521983.3 | 88.9% | 88.8% | (many diffs) |
| 20 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_011521982.3 | 88.3% | 88.3% | (many diffs) |
| 21 | human | 7090 | TLE3 | TLE family member 3, transc... | NM_001282982.2 | 87.6% | 87.7% | (many diffs) |
| 22 | human | 7090 | TLE3 | TLE family member 3, transc... | XM_017022532.2 | 67.7% | 65.7% | (many diffs) |
| 23 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511030.3 | 90% | 97.2% | (many diffs) |
| 24 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511029.3 | 89.9% | 97.1% | (many diffs) |
| 25 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511031.3 | 89.6% | 96.8% | (many diffs) |
| 26 | mouse | 21887 | Tle3 | transducin-like enhancer of... | NM_001083928.1 | 89.5% | 96.7% | (many diffs) |
| 27 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_017313278.1 | 89.4% | 96.6% | (many diffs) |
| 28 | mouse | 21887 | Tle3 | transducin-like enhancer of... | NM_009389.2 | 89.4% | 96.5% | (many diffs) |
| 29 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_017313279.1 | 89% | 96.2% | (many diffs) |
| 30 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511028.3 | 89% | 96.1% | (many diffs) |
| 31 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511026.3 | 88.7% | 95.9% | (many diffs) |
| 32 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511027.3 | 88.4% | 95.5% | (many diffs) |
| 33 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_017313277.1 | 88.3% | 95.4% | (many diffs) |
| 34 | mouse | 21887 | Tle3 | transducin-like enhancer of... | NM_001083927.1 | 88.2% | 95.3% | (many diffs) |
| 35 | mouse | 21887 | Tle3 | transducin-like enhancer of... | XM_006511025.3 | 87.8% | 94.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2382
- ORF length:
- 2316
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CCCGCCCCCT CCCCTGTCTT GTCTTCGCGG GCTCCAGGCT CCCCATCAAC 121 CCGGGCAGCC GGGATTTAAA TTCACGGTGG CTGAGTCTTG TGACAGGATC AAAGACGAAT 181 TCCAGTTCCT GCAAGCTCAG TATCACAGCC TCAAAGTGGA GTACGACAAG CTGGCAAACG 241 AGAAGACGGA GATGCAGCGC CATTATGTGA TGTACTATGA GATGTCCTAT GGCTTGAACA 301 TTGAAATGCA CAAGCAGACA GAGATTGCGA AGAGACTGAA CACAATTTTA GCACAGATCA 361 TGCCTTTCCT GTCACAAGAG CACCAGCAGC AGGTGGCGCA GGCAGTGGAG CGCGCCAAGC 421 AGGTCACCAT GACGGAGCTG AACGCCATCA TCGGGCAGCA GCTCCAGGCG CAGCACCTCT 481 CCCATGCCAC ACACGGCCCC CCGGTCCAGT TGCCACCCCA CCCGTCAGGT CTCCAGCCTC 541 CAGGAATCCC CCCAGTGACA GGGAGCAGCT CCGGGCTGCT GGCACTGGGC GCCCTGGGCA 601 GCCAGGCCCA TCTGACGGTG AAGGATGAGA AGAACCACCA TGAACTCGAT CACAGAGAGA 661 GAGAATCCAG TGCGAATAAC TCTGTGTCAC CCTCGGAAAG CCTCCGGGCC AGTGAGAAGC 721 ACCGGGGCTC TGCGGACTAC AGCATGGAAG CCAAGAAGCG GAAGGCGGAA GAGAAGGACA 781 GCTTGAGCCG ATACGACAGT GATGGGGACA AGAGTGATGA TCTGGTGGTG GATGTTTCCA 841 ATGAGGACCC CGCAACGCCC CGGGTCAGCC CGGCACACTC CCCTCCTGAA AATGGGCTGG 901 ACAAGGCCCG TAGCCTGAAA AAAGATGCCC CCACCAGCCC TGCCTCGGTG GCCTCTTCCA 961 GTAGCACACC TTCCTCCAAG ACCAAAGACC TTGGTCATAA CGACAAATCC TCCACCCCTG 1021 GGCTCAAGTC CAACACACCA ACCCCAAGGA ACGACGCCCC AACTCCAGGC ACCAGCACGA 1081 CCCCAGGGCT CAGGTCGATG CCGGGTAAAC CTCCGGGCAT GGACCCGATA GGTATAATGG 1141 CCTCGGCTCT GCGCACGCCC ATCTCCATCA CCAGCTCCTA TGCGGCGCCC TTCGCCATGA 1201 TGAGCCACCA TGAGATGAAC GGCTCCCTCA CCAGTCCTGG CGCCTACGCC GGCCTCCACA 1261 ACATCCCACC CCAGATGAGC GCCGCCGCCG CTGCTGCAGC CGCTACCTAT GGCCGATCGC 1321 CAATGGTTGG TTTTGACCCT CACCCCCCGA TGCGGGCCAC AGGCCTCCCC TCAAGCCTGG 1381 CCTCCATTCC TGGAGGAAAA CCAGCGTACT CATTCCATGT GAGTGCTGAT GGGCAGATGC 1441 AGCCCGTGCC CTTCCCCCAC GACGCCCTGG CAGGCCCCGG CATCCCGAGG CACGCCCGGC 1501 AGATCAACAC ACTCAGCCAC GGGGAGGTGG TGTGTGCCGT GACCATCAGC AACCCCACGA 1561 GGCACGTCTA CACAGGTGGC AAGGGCTGCG TGAAGATCTG GGACATCAGC CAGCCAGGCA 1621 GCAAGAGCCC CATCTCCCAG CTGGACTGCC TGAACAGGGA CAATTACATC CGCTCCTGCA 1681 AGCTGCTCCC TGATGGGCGC ACGCTCATCG TGGGCGGCGA GGCCAGCACG CTCACCATCT 1741 GGGACCTGGC CTCACCCACG CCCCGCATCA AGGCCGAGCT GACGTCCTCG GCTCCCGCCT 1801 GTTATGCCCT GGCCATTAGC CCTGACGCCA AAGTCTGCTT CTCCTGCTGC AGCGATGGGA 1861 ACATTGCTGT CTGGGACCTG CACAACCAGA CCCTGGTCAG GCAGTTCCAG GGCCACACAG 1921 ATGGGGCCAG CTGCATAGAC ATCTCCCATG ATGGCACCAA ACTGTGGACA GGGGGCCTGG 1981 ACAACACAGT GCGCTCCTGG GACCTGCGGG AGGGCCGACA GCTACAGCAG CATGACTTCA 2041 CTTCCCAGAT CTTCTCGCTG GGCTACTGCC CCACTGGGGA GTGGCTGGCT GTGGGCATGG 2101 AGAGCAGCAA CGTGGAGGTG CTGCACCACA CCAAGCCTGA CAAGTACCAG CTGCACCTGC 2161 ACGAGAGCTG CGTGCTCTCC CTCAAGTTCG CCTACTGCGG CAAGTGGTTC GTGAGCACTG 2221 GGAAAGATAA CCTTCTCAAC GCCTGGAGGA CGCCTTATGG AGCCAGCATA TTCCAGTCTA 2281 AAGAATCCTC GTCTGTCTTG AGTTGTGACA TTTCAGCGGA TGACAAATAC ATTGTAACAG 2341 GCTCTGGTGA CAAGAAGGCC ACAGTTTATG AGGTCATCTA CTACCCAACT TTCTTGTACA 2401 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac