Transcript: Human NM_001282981.1

Homo sapiens TLE family member 3, transcriptional corepressor (TLE3), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-07-10
Taxon:
Homo sapiens (human)
Gene:
TLE3 (7090)
Length:
4684
CDS:
74..2362

Additional Resources:

NCBI RefSeq record:
NM_001282981.1
NBCI Gene record:
TLE3 (7090)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282981.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000019691 GAGAGAATCCAGTGCGAATAA pLKO.1 631 CDS 100% 13.200 18.480 N TLE3 n/a
2 TRCN0000412751 TTTATGAGGTCATCTACTAAA pLKO_005 2343 CDS 100% 13.200 18.480 N TLE3 n/a
3 TRCN0000019692 AGCTGCATAGACATCTCCCAT pLKO.1 1907 CDS 100% 2.640 3.696 N TLE3 n/a
4 TRCN0000019690 GCGTACTCATTCCATGTGAGT pLKO.1 1382 CDS 100% 0.264 0.211 N TLE3 n/a
5 TRCN0000443843 TGACAAGAAGGCCACAGTTTA pLKO_005 2326 CDS 100% 13.200 9.240 N Tle3 n/a
6 TRCN0000428811 TAGATTTATTGGAGGCTTATG pLKO_005 2621 3UTR 100% 10.800 7.560 N TLE3 n/a
7 TRCN0000418618 TGATCTGGTGGTGGATGTTTC pLKO_005 790 CDS 100% 10.800 7.560 N TLE3 n/a
8 TRCN0000019693 CCTATGGCTTGAACATTGAAA pLKO.1 255 CDS 100% 5.625 3.938 N TLE3 n/a
9 TRCN0000019689 CGCCATTATGTGATGTACTAT pLKO.1 227 CDS 100% 5.625 3.938 N TLE3 n/a
10 TRCN0000097966 GCGCCATTATGTGATGTACTA pLKO.1 226 CDS 100% 4.950 3.465 N Tle3 n/a
11 TRCN0000439719 GCGAAGAGACTGAACACAATC pLKO_005 296 CDS 100% 10.800 7.560 N Tle3 n/a
12 TRCN0000439755 AGATGTCCTATGGCTTGAATA pLKO_005 249 CDS 100% 13.200 7.920 N Tle3 n/a
13 TRCN0000443070 CCAAAGACCTTGGTCATAATG pLKO_005 954 CDS 100% 13.200 7.920 N Tle3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282981.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11191 pDONR223 100% 96.8% 96.9% None (many diffs) n/a
2 ccsbBroad304_11191 pLX_304 0% 96.8% 96.9% V5 (many diffs) n/a
3 TRCN0000479195 CTTACGAATAACTTTCACCGCCGG pLX_317 14.5% 96.8% 96.9% V5 (many diffs) n/a
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