Construct: ORF ccsbBroadEn_11197
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013483.1_s300c1, BRDN0000397678
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TNFAIP3 (7128)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | XM_011536096.2 | 34.5% | 32% | (many diffs) |
| 2 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | NM_001270507.2 | 30.1% | 27.9% | (many diffs) |
| 3 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | NM_001270508.2 | 30.1% | 27.9% | (many diffs) |
| 4 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | NM_006290.4 | 30.1% | 27.9% | (many diffs) |
| 5 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | XM_005267119.1 | 30.1% | 27.9% | (many diffs) |
| 6 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | XM_011536095.1 | 30.1% | 27.9% | (many diffs) |
| 7 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | XM_024446532.1 | 30.1% | 27.9% | (many diffs) |
| 8 | human | 7128 | TNFAIP3 | TNF alpha induced protein 3 | XM_024446533.1 | 30.1% | 27.9% | (many diffs) |
| 9 | mouse | 21929 | Tnfaip3 | tumor necrosis factor, alph... | NM_009397.3 | 27.2% | 26.9% | (many diffs) |
| 10 | mouse | 21929 | Tnfaip3 | tumor necrosis factor, alph... | XM_006512702.2 | 27.2% | 26.9% | (many diffs) |
| 11 | mouse | 21929 | Tnfaip3 | tumor necrosis factor, alph... | NM_001166402.1 | 25.9% | 25.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 810
- ORF length:
- 744
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGAACAAGTC CTTCCTCAGG CTTTGTATTT GAGCAATATG CGGAAAGCTG 121 TGAAGATACG GGAGAGAACT CCAGAAGACA TTTTTAAACC TACTAATGGG ATCATTCATC 181 ATTTTAAAAC CATGCACCGA TACACACTGG AAATGTTCAG AACTTGCCAG TTTTGTCCTC 241 AGTTTCGGGA GATCATCCAC AAAGCCCTCA TCGACAGAAA CATCCAGGCC ACCCTGGAAA 301 GCCAGAAGAA ACTCAACTGG TGTCGAGAAG TCCGGAAGCT TGTGGCGCTG AAAACGAACG 361 GTGACGGCAA TTGCCTCATG CATGCCACTT CTCAGTACAT GTGGGGCGTT CAGGACACAG 421 ACTTGGTACT GAGGAAGGCG CTGTTCAGCA CGCTCAAGGA AACAGACACA CGCAACTTTA 481 AATTCCGCTG GCAACTGGAG TCTCTCAAAT CTCAGGAATT TGTTGAAACG GGGCTTTGCT 541 ATGATACTCG GAACTGGAAT GATGAATGGG ACAATCTTAT CAAAATGGCT TCCACAGACA 601 CACCCATGGC CCGAAGTGGA CTTCAGTACA ACTCACTGGA AGAAATACAC ATATTTGTCC 661 TTTGCAACAT CCTCAGAAGG CCAATCATTG TCATTTCAGG TGAGATGCCT GCAGATCACG 721 GATCTGTACT TAAATGCTTT CAGCCTTATG CCTTGGCTCC TGGAGAAAAC CACACTGCCA 781 AAGTTCAGGT AACAGAGTTC AATGGAATTT GCCCAACTTT CTTGTACAAA GTtggcatta 841 taagaaagca ttgcttatca atttgttgca acgaac