Construct: ORF ccsbBroadEn_11207
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001805.1_s300c1, BRDN0000392874
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DNAJC7 (7266)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_003315.4 | 97.9% | 97.9% | 1_30del |
| 2 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NM_001144766.2 | 90.4% | 90.4% | 0_1ins138 |
| 3 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525167.3 | 90.4% | 90.4% | 0_1ins138 |
| 4 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525168.3 | 90.4% | 90.4% | 0_1ins138 |
| 5 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_011525169.3 | 90.4% | 90.4% | 0_1ins138 |
| 6 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XM_017024994.2 | 90.4% | 90.4% | 0_1ins138 |
| 7 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752602.2 | 77% | 1_57del;1037_1136del;1610_1885del | |
| 8 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | XR_001752603.2 | 66.1% | (many diffs) | |
| 9 | human | 7266 | DNAJC7 | DnaJ heat shock protein fam... | NR_029431.1 | 65% | 1_311del;356_357ins89;1675_2007del | |
| 10 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | NM_019795.4 | 89.6% | 95.3% | (many diffs) |
| 11 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XM_011249154.2 | 88.9% | 93.8% | (many diffs) |
| 12 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780034.1 | 69.3% | (many diffs) | |
| 13 | mouse | 56354 | Dnajc7 | DnaJ heat shock protein fam... | XR_001780033.1 | 59.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1518
- ORF length:
- 1452
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGACCGAG CCGGAGCTGC TCGACGACCA AGAGGCGAAG AGGGAAGCAG 121 AGACTTTCAA GGAACAAGGA AATGCATACT ATGCCAAGAA AGATTACAAT GAAGCTTATA 181 ATTATTATAC AAAAGCCATA GATATGTGTC CTAAAAATGC TAGCTATTAT GGTAATCGAG 241 CAGCCACCTT GATGATGCTT GGAAGGTTCC GGGAAGCTCT TGGAGATGCA CAACAGTCAG 301 TGAGGTTGGA TGACAGTTTT GTCCGGGGAC ATCTACGAGA GGGCAAGTGC CACCTCTCTC 361 TGGGGAATGC CATGGCAGCA TGTCGCAGCT TCCAGAGAGC CCTAGAACTG GATCATAAAA 421 ATGCTCAGGC ACAACAAGAG TTCAAGAATG CTAATGCAGT CATGGAATAT GAGAAAATAG 481 CAGAAACAGA TTTTGAGAAG CGAGATTTTC GGAAGGTTGT TTTCTGCATG GACCGTGCCC 541 TAGAATTTGC CCCTGCCTGC CATCGCTTCA AAATCCTCAA GGCAGAATGT TTAGCAATGC 601 TGGGTCGTTA TCCAGAAGCA CAGTCTGTGG CTAGTGACAT TCTACGAATG GATTCCACCA 661 ATGCAGATGC TCTGTATGTA CGAGGTCTTT GCCTTTATTA CGAAGATTGT ATTGAGAAGG 721 CAGTTCAGTT TTTCGTACAG GCTCTCAGGA TGGCTCCTGA CCACGAGAAG GCCTGCATTG 781 CCTGCAGAAA TGCCAAAGCA CTCAAAGCAA AGAAAGAAGA TGGGAATAAA GCATTTAAGG 841 AAGGAAATTA CAAACTAGCA TATGAACTGT ACACAGAAGC CCTGGGGATA GACCCCAACA 901 ATATAAAAAC AAATGCTAAA CTCTACTGTA ATCGGGGTAC GGTTAATTCC AAGCTTAGGA 961 AACTAGATGA TGCAATAGAA GACTGCACAA ATGCAGTGAA GCTTGATGAC ACTTACATAA 1021 AAGCCTACTT GAGAAGAGCT CAGTGTTACA TGGACACAGA ACAGTATGAA GAAGCAGTAC 1081 GAGACTATGA AAAAGTATAC CAGACAGAGA AAACAAAAGA ACACAAACAG CTCCTAAAAA 1141 ATGCGCAGCT GGAACTGAAG AAGAGTAAGA GGAAAGATTA CTACAAGATT CTAGGAGTGG 1201 ACAAGAATGC CTCTGAGGAC GAGATCAAGA AAGCTTATCG GAAACGGGCC TTGATGCACC 1261 ATCCAGATCG GCATAGTGGA GCCAGTGCTG AGGTTCAGAA GGAGGAGGAG AAGAAGTTCA 1321 AGGAAGTTGG AGAGGCCTTT ACTATCCTCT CTGATCCCAA GAAAAAGACT CGCTATGACA 1381 GTGGACAGGA CCTAGATGAG GAGGGCATGA ATATGGGTGA TTTTGATCCA AACAATATCT 1441 TCAAGGCATT CTTTGGCGGT CCTGGCGGCT TCAGCTTTGA AGCATCTGGT CCAGGGAATT 1501 TCTTTTTTCA ATTTGGCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1561 gcttatcaat ttgttgcaac gaac