Transcript: Human XR_001752603.2

PREDICTED: Homo sapiens DnaJ heat shock protein family (Hsp40) member C7 (DNAJC7), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DNAJC7 (7266)
Length:
1775
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001752603.2
NBCI Gene record:
DNAJC7 (7266)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001752603.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423213 ATGGACCGTGCCCTAGAATTT pLKO_005 520 3UTR 100% 13.200 18.480 N DNAJC7 n/a
2 TRCN0000426854 TAGCAATGCTGGGTCGTTATC pLKO_005 584 3UTR 100% 10.800 15.120 N DNAJC7 n/a
3 TRCN0000008770 GCCCTAGAACTGGATCATAAA pLKO.1 391 3UTR 100% 13.200 9.240 N DNAJC7 n/a
4 TRCN0000428728 GCTAATGCAGTCATGGAATAT pLKO_005 442 3UTR 100% 13.200 9.240 N DNAJC7 n/a
5 TRCN0000423105 AGGAAACTAGATGATGCAATA pLKO_005 949 3UTR 100% 10.800 7.560 N DNAJC7 n/a
6 TRCN0000008773 GCCATAGATATGTGTCCTAAA pLKO.1 187 3UTR 100% 10.800 7.560 N DNAJC7 n/a
7 TRCN0000008771 GCTCTGTATGTACGAGGTCTT pLKO.1 661 3UTR 100% 4.050 2.835 N DNAJC7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001752603.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01721 pDONR223 100% 67.7% None (many diffs) n/a
2 ccsbBroad304_01721 pLX_304 0% 67.7% V5 (many diffs) n/a
3 TRCN0000471812 ATCGGGCTTACCTGACCAAAAATA pLX_317 23.1% 67.7% V5 (many diffs) n/a
4 ccsbBroadEn_11207 pDONR223 100% 66.1% None (many diffs) n/a
5 ccsbBroad304_11207 pLX_304 0% 66.1% V5 (many diffs) n/a
6 TRCN0000481213 GTGGCGCCAAGTCGCAATGGACTC pLX_317 26.7% 66.1% V5 (many diffs) n/a
7 ccsbBroadEn_01722 pDONR223 100% 58.9% None (many diffs) n/a
8 ccsbBroad304_01722 pLX_304 0% 58.9% V5 (many diffs) n/a
9 TRCN0000471457 GGCTCTGTTACACGCCGCCTATAT pLX_317 32.1% 58.9% V5 (many diffs) n/a
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