Construct: ORF ccsbBroadEn_11240
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015664.1_s300c1, BRDN0000393620
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF215 (7762)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7762 | ZNF215 | zinc finger protein 215 | NM_001354854.1 | 99.8% | 100% | 780A>T |
| 2 | human | 7762 | ZNF215 | zinc finger protein 215 | XM_024448683.1 | 88.9% | 88.1% | (many diffs) |
| 3 | human | 7762 | ZNF215 | zinc finger protein 215 | XR_002957191.1 | 56.3% | (many diffs) | |
| 4 | human | 7762 | ZNF215 | zinc finger protein 215 | NM_001354853.2 | 55.4% | 52.2% | (many diffs) |
| 5 | human | 7762 | ZNF215 | zinc finger protein 215 | NM_013250.4 | 55.4% | 52.2% | (many diffs) |
| 6 | human | 7762 | ZNF215 | zinc finger protein 215 | NR_149005.2 | 32.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 978
- ORF length:
- 912
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GCCTCTGAGC AAGTTGATGG CTATCTCAAA ACCTCGAAAC CTGTCTCTAC 121 GTGAACAAAG AGAGGTTCTG AGAGCAGATA TGTCTTGGCA GCAGGAAACC AACCCCGTCG 181 TGGAGACACA TGACTCTGAG GCATCTCGTC AAAAGTTCAG ACATTTCCAG TATTTGAAAG 241 TGTCTGGGCC CCATGAAGCC CTGAGCCAAC TCTGGGAGCT CTGTCTTCAA TGGCTGAGAC 301 CAGAGATTCA TACAAAGAAG CAGATTATAG AACTGTTGGT GCTGGAACAA TTCCTGGCAA 361 TCCTGCCTGA AGAAGTCAGG ACTTGGGTGA ATTTACAACA TCCAAACAAC AGTAAAGATA 421 TGGTGACCCT CATAGAAGAT GTGATTGAAA TGCTTGAAGA TGAAGATATG CCCTGCAAGG 481 ACTCTGCCCT GCAGATGGGG AGCATCAAGG AGAAAATGAA AGCTGGCTCA CGAACAGGCA 541 AACCACAGGA ACCAGTGACA TTCAAAGATG TGGTTGTGGA ATTCAGCAAG GAAGAGTGGG 601 GGCAACTGGA CTCTGCTGTA AAGAACCTGT ACAGGAATGT GATGCTGGAA AACTTTAGGA 661 ACCTGAATTC ATTGCGTAAA GCACATCTAC TTTCCAAACC ATTTGAGAGC CTTAAGTTGG 721 AGAGTAAGAA AAAAAGATGG ATAATGGAGA AAGAAATACC AAGGAAGACT ATTTTTGACA 781 TGAAGAGTAT TTCTGGAGAA GAATCATCCC ATGGAGTGAT TATGACAAGG CTTACCGAAA 841 GTGGTCACCC TTCTTCAGAT GCCTGGAAAG ATGGAGTTTC CCTCTTGTTG CCCAGGCTGG 901 AGTATAATGA TGCAGTCTCG GCTCACTGCA ACCTCCACCT CTGGGTTCAA GTGATTCTCC 961 TGCCTCAGCC TCCTGAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1021 gcttatcaat ttgttgcaac gaac