Construct: ORF ccsbBroadEn_11251
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006444.1_s300c1, BRDN0000456640
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BRD3 (8019)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8019 | BRD3 | bromodomain containing 3 | XM_017015165.2 | 75.3% | 75.6% | (many diffs) |
| 2 | human | 8019 | BRD3 | bromodomain containing 3 | NM_007371.4 | 75.2% | 75.5% | (many diffs) |
| 3 | human | 8019 | BRD3 | bromodomain containing 3 | XM_006717291.3 | 75.2% | 75.5% | (many diffs) |
| 4 | human | 8019 | BRD3 | bromodomain containing 3 | XM_011519052.2 | 75.2% | 75.5% | (many diffs) |
| 5 | human | 8019 | BRD3 | bromodomain containing 3 | XM_017015166.2 | 31.3% | 31.4% | (many diffs) |
| 6 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_001113573.1 | 66.9% | 72.1% | (many diffs) |
| 7 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_023336.4 | 66.9% | 72.1% | (many diffs) |
| 8 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_001113574.1 | 65.3% | 70.5% | (many diffs) |
| 9 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_006498249.3 | 65.3% | 70.5% | (many diffs) |
| 10 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_006498250.2 | 65.3% | 70.5% | (many diffs) |
| 11 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239155.2 | 65.3% | 70.5% | (many diffs) |
| 12 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239156.2 | 65.3% | 70.5% | (many diffs) |
| 13 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239157.2 | 65.3% | 70.5% | (many diffs) |
| 14 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239158.2 | 65.3% | 70.5% | (many diffs) |
| 15 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_017319221.1 | 28.2% | 29.7% | (many diffs) |
| 16 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239159.2 | 27.6% | 29% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1734
- ORF length:
- 1668
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CACCGCCACG ACAGTCGCCC CCGCGGGGAT CCCGGCGACC CCGGGCCCTG 121 TGAACCCACC CCCCCCGGAG GTCTCCAACC CCAGCAAGCC CGGCCGCAAG ACCAACCAGC 181 TGCAGTACAT GCAGAATGTG GTGGTGAAGA CGCTCTGGAA ACACCAGTTC GCCTGGCCCT 241 TCTACCAGCC CGTGGACGCA ATCAAATTGA ACCTGCCGGA TTATCATAAA ATAATTAAAA 301 ACCCAATGGA TATGGGGACT ATTAAGAAGA GACTAGAAAA TAATTATTAT TGGAGTGCAA 361 GCGAATGTAT GCAGGACTTC AACACCATGT TTACAAATTG TTACATTTAT AACAAGCCCA 421 CAGATGACAT AGTGCTAATG GCCCAAGCTT TAGAGAAAAT TTTTCTACAA AAAGTGGCCC 481 AGATGCCCCA AGAGGAAGTT GAATTATTAC CCCCTGCTCC AAAGGGCAAA GGTCGGAAGC 541 CGGCTGCGGG AGCCCAGAGC GCAGGTACAC AGCAAGTGGC GGCCGTGTCC TCTGTCTCCC 601 CAGCGACCCC CTTTCAGAGC GTGCCCCCCA CCGTCTCCCA GACGCCCGTC ATCGCTGCCA 661 CCCCTGTACC AACCATCACT GCAAACGTCA CGTCGGTCCC AGTCCCCCCA GCTGCCGCCC 721 CACCTCCTCC TGCCACACCC ATCGTCCCCG TGGTCCCTCC TACGCCGCCT GTCGTCAAGA 781 AAAAGGGCGT GAAGCGGAAA GCAGACACAA CCACTCCCAC GACGTCGGCC ATCACTGCCA 841 GCCGGAGTGA GTCGCCCCCG CCGTTGTCAG ACCCCAAGCA GGCCAAAGTG GTGGCCCGGC 901 GGGAGAGTGG TGGCCGCCCC ATCAAGCCTC CCAAGAAGGA CCTGGAGGAC GGCGAGGTGC 961 CCCAGCACGC AGGCAAGAAG GGCAAGCTGT CGGAGCACCT GCGCTACTGC GACAGCATCC 1021 TCAGGGAGAT GCTATCCAAG AAGCACGCGG CCTACGCCTG GCCCTTCTAC AAGCCAGTGG 1081 ATGCCGAGGC CCTGGAGCTG CACGACTACC ACGACATCAT CAAGCACCCG ATGGACCTCA 1141 GCACCGTGAA AAGGAAGATG GATGGCCGAG AGTACCCAGA CGCACAGGGC TTTGCTGCTG 1201 ATGTCCGGCT GATGTTCTCG AATTGCTACA AATACAATCC CCCAGACCAC GAGGTTGTGG 1261 CCATGGCCCG GAAGCTCCAG GACGTGTTTG AGATGAGGTT TGCCAAGATG CCAGATGAGC 1321 CCGTGGAGGC ACCGGCGCTG CCTGCCCCCG CGGCCCCCAT GGTGAGCAAG GGCGCTGAGA 1381 GCAGCCGTAG CAGTGAGGAG AGCTCTTCGG ACTCAGGCAG CTCGGACTCG GAGGAGGAGC 1441 GGGCCACCAG GCTGGCGGAG CTGCAGGAGC AGCTGAAGGC CGTGCACGAG CAGCTGGCCG 1501 CCCTGTCTCA GGCCCCAGTA AACAAACCAA AGAAGAAGAA GGAGAAGAAG GAGAAGGAGA 1561 AGAAGAAGAA GGACAAGGAG AAGGAGAAGG AGAAGCACAA AGTGAAGGCC GAGGAAGAGA 1621 AGAAGGCCAA GGTGGCTCCG CCTGCCAAGC AGGCTCAGCA GAAGAAGGCT CCTGCCAAGA 1681 AGGCCAACAG CACGACCACG GCCGGCAGAG ATCATTTCTT GACCTGTGGA GTTTGCCCAA 1741 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac