Construct: ORF ccsbBroadEn_11260
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015944.1_s300c1, BRDN0000393278
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LZTR1 (8216)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8216 | LZTR1 | leucine zipper like transcr... | NM_006767.4 | 65.6% | 65.7% | 1_864del;1683C>T;2506C>T |
| 2 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | NM_001331227.1 | 79.3% | 86.5% | (many diffs) |
| 3 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | XM_017317119.1 | 79.3% | 86.5% | (many diffs) |
| 4 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | XM_017317120.1 | 78.5% | 85.5% | (many diffs) |
| 5 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | XM_017317121.1 | 78.5% | 85.5% | (many diffs) |
| 6 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | NM_001331226.1 | 63.6% | 69.3% | (many diffs) |
| 7 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | NM_025808.4 | 57% | 62.1% | (many diffs) |
| 8 | mouse | 66863 | Lztr1 | leucine-zipper-like transcr... | XM_006522477.2 | 41.7% | 44.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1722
- ORF length:
- 1656
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GGCCTTTGAC CGCCACCTCT ATGTGTTTGG GGGTGCGGCC GACAACACGC 121 TGCCCAACGA GCTGCACTGC TATGACGTGG ACTTCCAGAC CTGGGAGGTC GTCCAGCCCA 181 GCTCCGACAG CGAGGTTGGT GGGGCTGAAG TGCCCGAGCG AGCCTGTGCT TCCGAGGAGG 241 TGCCCACCCT GACCTATGAG GAGCGGGTTG GCTTCAAGAA GTCCCGAGAT GTGTTTGGCC 301 TGGACTTTGG CACCACCTCA GCCAAGCAGC CCACCCAGCC TGCCTCGGAG CTGCCCAGTG 361 GGAGGCTCTT CCACGCGGCT GCTGTCATCT CGGACGCCAT GTACATCTTC GGGGGCACGG 421 TGGACAACAA CATCCGCAGC GGGGAGATGT ACAGGTTCCA GTTCTCCTGT TACCCTAAAT 481 GCACGCTGCA CGAGGACTAC GGGCGGCTGT GGGAGAGCCG CCAGTTCTGC GACGTGGAGT 541 TCGTGCTGGG TGAGAAGGAG GAGTGCGTGC AGGGCCACGT AGCCATTGTC ACAGCGCGGA 601 GCCGCTGGCT TCGCAGGAAG ATCACGCAGG CGCGGGAGAG GCTGGCCCAG AAGCTGGAGC 661 AGGAGGCCGC CCCAGTTCCC AGGGAGGCCC CCGGCGTGGC TGCTGGTGGG GCCCGGCCGC 721 CCCTGCTGCA CGTGGCCATC CGGGAGGCCG AGGCCCGGCC CTTCGAGGTG CTCATGCAGT 781 TCCTCTACAC CGACAAGATC AAATACCCAC GGAAAGGCCA TGTGGAGGAT GTGCTGCTCA 841 TCATGGATGT GTACAAACTG GCACTGAGCT TCCAGTTGTG CCGTCTGGAG CAGCTGTGCC 901 GCCAGTACAT CGAGGCCTCC GTGGACCTGC AGAACGTGCT GGTTGTGTGC GAGAGTGCCG 961 CCCGGCTGCA GCTGAGCCAA CTCAAGGAGC ACTGCCTGAA CTTCGTGGTA AAGGAGTCCC 1021 ACTTCAACCA GGTGATCATG ATGAAGGAGT TCGAGCGCCT CTCCTCTCCA CTGATAGTGG 1081 AGATTGTGCG GCGGAAGCAG CAGCCGCCCC CTCGCACTCC CTTGGACCAG CCAGTGGACA 1141 TTGGCACATC TCTGATCCAG GACATGAAGG CATACCTGGA GGGAGCGGGC GCGGAATTCT 1201 GTGACATCAC TCTGTTGCTT GACGGGCACC CACGGCCAGC CCACAAGGCT ATCCTGGCCG 1261 CCCGCTCCAG CTACTTTGAA GCCATGTTCC GGTCCTTCAT GCCCGAAGAT GGGCAGGTGA 1321 ACATCTCCAT CGGGGAGATG GTGCCCAGCA GGCAGGCCTT CGAGTCCATG CTGCGCTACA 1381 TCTACTACGG CGAGGTCAAC ATGCCGCCCG AGGACTCGCT CTACTTGTTT GCGGCCCCCT 1441 ACTACTACGG CTTCTACAAC AACCGGCTGC AGGCGTACTG CAAGCAGAAC CTGGAGATGA 1501 ACGTGACGGT GCAGAACGTG CTGCAGATCC TGGAGGCAGC TGACAAAACG CAGGCACTGG 1561 ACATGAAGCG GCACTGCCTG CACATCATTG TGCACCAGTT CACCAAGGTC TCCAAGTTGC 1621 CCACCCTGCG GTCGCTGAGC CAGCAGCTGC TGCTGGACAT CATAGACTCC CTGGCCTCCC 1681 ACATCTCAGA CAAGCAGTGC GCAGAGTTGG GCGCCGACAT CTGCCCAACT TTCTTGTACA 1741 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac