Construct: ORF ccsbBroadEn_11263
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010498.1_s300c1, BRDN0000389245
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- AKAP17A (8227)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8227 | AKAP17A | A-kinase anchoring protein 17A | NM_005088.3 | 61.8% | 55% | (many diffs) |
| 2 | human | 8227 | AKAP17A | A-kinase anchoring protein 17A | NR_027383.2 | 39.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1404
- ORF length:
- 1338
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGCGGCTACC ATCGTGCACG ACACGTCTGA GGCCGTGGAG CTCTGCCCTG 121 CTTACGGCTT GTACCTGAAG CCCATCACCA AGATGACCAT CAGCGTGGCA CTCCCGCAGC 181 TGAAGCAGCC GGGGAAGTCC ATCTCCAACT GGGAGGTGAT GGAGAGGCTG AAGGGCATGG 241 TGCAGAACCA CCAGTTCTCC ACGCTGCGTA TTTCCAAGAG CACCATGGAC TTCATCCGCT 301 TCGAGGGGGA GGTGGAGAAC AAGAGCCTGG TCAAGTCTTT TCTGGCCTGC CTGGACGGCA 361 AGACCATCAA GCTCAGCGGC TTCTCCGACA TCCTGAAGGT GCGCGCGGCC GAGTTCAAGA 421 TCGACTTCCC CACCCGCCAC GACTGGGACT CCTTCTTCCG CGACGCCAAG GACATGAACG 481 AGACCCTGCC GGGGGAGCGG CCGGACACCA TCCACCTGGA GGGGCTGCCC TGCAAGTGGT 541 TCGCCCTGAA GGAGTCGGGC TCCGAGAAGC CCAGCGAGGA CGTCCTGGTC AAGGTGTTTG 601 AGAAGTTCGG GGAGATCCGG AATGTGGACA TCCCCATGCT GGACTCCTAC CGGGAGGAGA 661 TGACGGGCCG CAACTTCCAC ACCTTCAGTT TCGGGGGGCA CTTGAACTTC GAGGCCTATG 721 TGCAGTACCG CGAGTACATG GGCTTCATCC AGGCCATGAG CGCCCTGCGC GGGATGAAAC 781 TCATGTACAA GGGCGAGGAC GGCAAGGCCG TGGCCTGCAA CATCAAGGTT TCTTTTGATT 841 CGACCAAACA CCTGAGTGAT GCCTCAATTA AGAAGCGGCA GCTGGAGAGG CAGAAGCTTC 901 AGGAACTGGA GCAGCAAAGA GAAGAACAAA AGCGCAGAGA GAAGGAAGCG GAGGAGAGGC 961 AGCGAGCGGA GGAAAGGAAA CAAAAGGAGC TGGAAGAGCT GGAGCGAGAG AGGAAAAGAG 1021 AAGAGAAGCT TCGCAAGAGG GAGCAGAAGC AGAGGGACCG TGAGCTGCGC CGGAATCAGA 1081 AGAAGCTGGA GAAGCTGCAG GCGGAGGAGC AGAAGCAGCT GCAGGAGAAG ATCAAGCTGG 1141 AGGAGCGCAA GCTGCTGCTG GCCCAGAGGA ACCTGCAGTC CATCCGGCTC ATCGCCGAGC 1201 TGCTCAGCAG AGCCAAGGTA CCCGGGGGCT CCCTCTGCAG CCGCCAGCCG CGCCCGGGCT 1261 GCCCTCAGTG CCCTCCCCTG AAATGCGGGC GGCGTCACGG CGCCGTTTCC CCGCCGGCTG 1321 CAGCTGTAGC TACGAAACCA GCTTTAATGC CGAGGATGAC GGCTCCTTCC CGGGAGGGTG 1381 TAGCGCTCGT CTGTCGTTCC CGATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1441 agcattgctt atcaatttgt tgcaacgaac