Construct: ORF ccsbBroadEn_11326

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014720.1_s300c1, BRDN0000457057
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HIP1R (9026)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9026 HIP1R huntingtin interacting prot... NM_001303097.2 99.8% 99.8% 210C>T;1034A>G
2 human 9026 HIP1R huntingtin interacting prot... NM_001303099.2 94.6% 94% (many diffs)
3 human 9026 HIP1R huntingtin interacting prot... NM_003959.3 57.1% 56.4% (many diffs)
4 human 9026 HIP1R huntingtin interacting prot... XM_011538963.1 54.5% 53.3% (many diffs)
5 human 9026 HIP1R huntingtin interacting prot... XM_024449270.1 37.9% 37.3% (many diffs)
6 mouse 29816 Hip1r huntingtin interacting prot... XR_387569.3 67.5% (many diffs)
7 mouse 29816 Hip1r huntingtin interacting prot... XM_006530370.3 57.9% 59.7% (many diffs)
8 mouse 29816 Hip1r huntingtin interacting prot... XM_006530369.3 57.8% 59.7% (many diffs)
9 mouse 29816 Hip1r huntingtin interacting prot... XR_387568.3 57.3% (many diffs)
10 mouse 29816 Hip1r huntingtin interacting prot... NM_145070.3 50.2% 51.8% (many diffs)
11 mouse 29816 Hip1r huntingtin interacting prot... XR_387567.3 36.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1914
ORF length:
1845
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAACAGCATC AAGAACGTGC CGGCGCGGGT GCTGAGCCGC AGGCCGGGCC
121ACAGCCTGGA GGCCGAGCGC GAGCAGTTCG ACAAGACCCA GGCCATCAGC ATCAGCAAAG
181CCATCAACAC CCAGGAGGCC CCCGTGAAGG AGAAGCACGC CCGGCGCATC ATTCTGGGCA
241CACACCACGA GAAGGGGGCT TTCACCTTCT GGTCCTATGC CATTGGGCTG CCGCTGCCCA
301GCAGCTCCAT TCTCAGCTGG AAGTTCTGCC ACGTCCTCCA CAAGGTCCTT CGAGACGGGC
361ACCCCAATGT GCTGCATGAC TGCCAGCGGT ACCGCAGCAA CATCCGGGAG ATTGGAGACC
421TGTGGGGACA TTTGCATGAC CGCTACGGAC AGCTGGTGAA TGTCTACACC AAGCTGCTGC
481TGACCAAGAT CTCCTTCCAC CTCAAGCATC CCCAGTTTCC CGCGGGCCTG GAGGTGACAG
541ATGAGGTACT GGAGAAGGCA GCTGGGACCG ATGTCAACAA CATCTTCCAG CTCACTGTGG
601AGATGTTTGA TTACATGGAT TGTGAGCTGA AGCTTTCTGA ATCAGTTTTC CGACAGCTCA
661ACACGGCCAT CGCCGTATCC CAGATGTCCT CAGGCCAGTG CCGCCTGGCC CCCCTCATCC
721AGGTCATCCA GGACTGCAGC CACCTCTACC ACTACACGGT CAAGCTCCTG TTCAAGCTAC
781ACTCTTGTCT CCCTGCGGAC ACCCTGCAAG GCCACAGGGA CCGGTTCCAC GAGCAGTTTC
841ACAGCCTCAG GAACTTCTTC CGCAGAGCCT CCGACATGCT GTACTTCAAG CGGCTCATCC
901AGATCCCCCG GCTGCCCGAG GGACCCCCTA ACTTCCTGCG GGCCTCAGCC CTGGCTGAGC
961ACATCAAGCC GGTGGTGGTG ATCCCCGAGG AGGCCCCGGA AGATGAGGAG CCGGAGAATC
1021TCATTGAGAT CAGCACAGGG CCCCCCGCGG GGGAGCCAGT GGTGGTGGCT GACCTCTTCG
1081ATCAGACGTT TGGACCCCCC AGTGGGTCTG TGAAGGACGA CAGGGACCTC CAGATTGAGA
1141GCTTGAAGAG AGAGGTGGAA ATGCTCCGCT CTGAACTGGA GAAGATCAAG CTGGAGGCCC
1201AGCGGTACAT CGCGCAGCTG AAGAGCCAGG TGAATGCACT GGAGGGTGAG CTGGAGGAGC
1261AGCGGAAGCA GAAGCAGAAG GCCCTGGTGG ATAATGAGCA GCTCCGCCAC GAGCTGGCCC
1321AGCTGAGGGC TGCCCAGCTG GAGGGCGAGC GGAGCCAGGG CCTGCGTGAG GAGGCTGAGA
1381GGAAGGCCAG TGCCACGGAG GCGCGCTACA ACAAGCTGAA GGAAAAGCAC AGTGAGCTCG
1441TCCATGTGCA CGCGGAGCTG CTCAGAAAGA ACGCGGACAC AGCCAAGCAG CTGACGGTGA
1501CGCAGCAAAG CCAGGAGGAG GTGGCGCGGG TGAAGGAGCA GCTGGCCTTC CAGGTGGAGC
1561AGGTGAAGCG GGAGTCGGAG TTGAAGCTAG AGGAGAAGAG CGACCAGCTG GAGAAGCTCA
1621AGAGGGAGCT GGAGGCCAAG GCCGGAGAGC TGGCCCGCGC GCAGGAGGCC CTGAGCCACA
1681CAGAGCAGAG CAAGTCGGAG CTGAGCTCAC GGCTGGACAC GCTGAGTGCG GAGAAGGATG
1741CTCTGAGTGG AGCTGTGCGG CAGCGGGAGG CAGACCTGCT GGCGGCGCAG AGCCTGGTGC
1801GCGAGACAGA GGCGGCGCTG AGCCGGGAGC AGCAGCGCAG CTCCCAGGAG CAGGGCGAGT
1861TGCAGGGCCG GCTGGCAGAG AGGGTATGGC CTCCCCAGAT GCAGCAGCAC CACTTGCCAA
1921CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)