Transcript: Human NM_001303097.2

Homo sapiens huntingtin interacting protein 1 related (HIP1R), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
HIP1R (9026)
Length:
2711
CDS:
95..1942

Additional Resources:

NCBI RefSeq record:
NM_001303097.2
NBCI Gene record:
HIP1R (9026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001303097.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000382458 ACCTCTTCGATCAGACGTTTG pLKO_005 1098 CDS 100% 6.000 8.400 N HIP1R n/a
2 TRCN0000381959 CAGAAGGCCCTGGTGGATAAT pLKO_005 1301 CDS 100% 13.200 9.240 N HIP1R n/a
3 TRCN0000117225 CGGAGAATCTCATTGAGATCA pLKO.1 1038 CDS 100% 4.950 3.465 N HIP1R n/a
4 TRCN0000117226 GCCGGAGAATCTCATTGAGAT pLKO.1 1036 CDS 100% 4.950 3.465 N HIP1R n/a
5 TRCN0000117224 CGCTACAACAAGCTGAAGGAA pLKO.1 1430 CDS 100% 3.000 2.100 N HIP1R n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001303097.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11326 pDONR223 100% 99.8% 99.8% None 210C>T;1034A>G n/a
2 ccsbBroad304_11326 pLX_304 0% 99.8% 99.8% V5 210C>T;1034A>G n/a
3 TRCN0000477983 ATATCTCCAGTATACTTTCAGAAG pLX_317 13.5% 99.8% 99.8% V5 210C>T;1034A>G n/a
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