Transcript: Human XM_024449270.1

PREDICTED: Homo sapiens huntingtin interacting protein 1 related (HIP1R), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HIP1R (9026)
Length:
3863
CDS:
64..2655

Additional Resources:

NCBI RefSeq record:
XM_024449270.1
NBCI Gene record:
HIP1R (9026)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_024449270.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000382458 ACCTCTTCGATCAGACGTTTG pLKO_005 452 CDS 100% 6.000 8.400 N HIP1R n/a
2 TRCN0000117222 GCCCGTCAGATTTGAACGAAT pLKO.1 3579 3UTR 100% 4.950 6.930 N HIP1R n/a
3 TRCN0000117223 CCGAAGTGTAACCACCAAGAA pLKO.1 2538 CDS 100% 4.950 3.960 N HIP1R n/a
4 TRCN0000381959 CAGAAGGCCCTGGTGGATAAT pLKO_005 655 CDS 100% 13.200 9.240 N HIP1R n/a
5 TRCN0000381579 GGACAGAGACACCATGGATTT pLKO_005 2331 CDS 100% 10.800 7.560 N HIP1R n/a
6 TRCN0000381891 TGCTTCACACGGGCAAGTATG pLKO_005 2129 CDS 100% 10.800 7.560 N HIP1R n/a
7 TRCN0000381009 AGATGCTGTGCGGAGGATTGA pLKO_005 1833 CDS 100% 4.950 3.465 N HIP1R n/a
8 TRCN0000117225 CGGAGAATCTCATTGAGATCA pLKO.1 392 CDS 100% 4.950 3.465 N HIP1R n/a
9 TRCN0000117226 GCCGGAGAATCTCATTGAGAT pLKO.1 390 CDS 100% 4.950 3.465 N HIP1R n/a
10 TRCN0000381235 TGTTCTCGCACAGTCAATGAG pLKO_005 2260 CDS 100% 4.950 3.465 N HIP1R n/a
11 TRCN0000117224 CGCTACAACAAGCTGAAGGAA pLKO.1 784 CDS 100% 3.000 2.100 N HIP1R n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_024449270.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11326 pDONR223 100% 37.9% 37.3% None (many diffs) n/a
2 ccsbBroad304_11326 pLX_304 0% 37.9% 37.3% V5 (many diffs) n/a
3 TRCN0000477983 ATATCTCCAGTATACTTTCAGAAG pLX_317 13.5% 37.9% 37.3% V5 (many diffs) n/a
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