Construct: ORF ccsbBroadEn_11348
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007177.1_s300c1, BRDN0000384981
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRFIP1 (9208)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | NM_001137551.1 | 26.6% | 26.6% | 1_867del |
| 2 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_005246142.2 | 25.9% | 25.9% | 1_897del |
| 3 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_005246141.4 | 24.5% | 24.5% | 1_969del |
| 4 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005263.2 | 22.5% | 22.5% | 1_1083del |
| 5 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005262.2 | 20.1% | 20.1% | 1_1245del |
| 6 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005261.2 | 19.4% | 19.4% | 1_1245del;1451_1510del |
| 7 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005260.2 | 19.4% | 19.4% | 1_1308del |
| 8 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005258.2 | 17.5% | 17.5% | 1_1482del |
| 9 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005257.2 | 17% | 17% | 1_1533del |
| 10 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005256.2 | 16.9% | 16.9% | 1_1482del;1688_1747del |
| 11 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005255.2 | 16.4% | 16.4% | 1_1596del |
| 12 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | NM_001137550.2 | 16.4% | 16.4% | 1_1605del |
| 13 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005254.2 | 15.8% | 15.8% | 1_1668del |
| 14 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XM_017005253.2 | 15.4% | 15.4% | 1_1668del;1874_1933del |
| 15 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739073.2 | 10.9% | (many diffs) | |
| 16 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739071.1 | 3.3% | 1_8172del;8488_9273del | |
| 17 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739067.1 | 3.3% | 1_8252del;8568_9353del | |
| 18 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739068.1 | 3.3% | 1_8273del;8589_9374del | |
| 19 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739070.1 | 3.3% | 1_8314del;8630_9415del | |
| 20 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739063.1 | 3.3% | 1_8343del;8659_9444del | |
| 21 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_002959364.1 | 3.3% | 1_8344del;8660_9445del | |
| 22 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739066.1 | 3.3% | 1_8345del;8661_9446del | |
| 23 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739060.1 | 3.3% | 1_8417del;8733_9518del | |
| 24 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739072.1 | 3.3% | 1_8418del;8734_9519del | |
| 25 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739059.2 | 3.3% | 1_8443del;8759_9544del | |
| 26 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739069.1 | 3.2% | 1_8450del;8766_9551del | |
| 27 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739061.1 | 3.2% | 1_8459del;8775_9560del | |
| 28 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739054.1 | 3.2% | 1_8513del;8829_9614del | |
| 29 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739056.2 | 3.2% | 1_8515del;8831_9616del | |
| 30 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739055.2 | 3.2% | 1_8530del;8846_9631del | |
| 31 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739057.1 | 3.2% | 1_8531del;8847_9632del | |
| 32 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739065.1 | 3.2% | 1_8548del;8864_9649del | |
| 33 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739053.1 | 3.2% | 1_8591del;8907_9692del | |
| 34 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739052.2 | 3.2% | 1_8602del;8918_9703del | |
| 35 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739064.1 | 3.2% | 1_8604del;8920_9705del | |
| 36 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739051.2 | 3.2% | 1_8629del;8945_9730del | |
| 37 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739062.1 | 3.2% | 1_8636del;8952_9737del | |
| 38 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739050.2 | 3.2% | 1_8662del;8978_9763del | |
| 39 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739049.2 | 3.2% | 1_8701del;9017_9802del | |
| 40 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739058.1 | 3.2% | 1_8710del;9026_9811del | |
| 41 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739047.2 | 3.1% | 1_8767del;9083_9868del | |
| 42 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739045.2 | 3.1% | 1_8851del;9167_9952del | |
| 43 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739043.1 | 3.1% | 1_8866del;9182_9967del | |
| 44 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739044.2 | 3.1% | 1_8881del;9197_9982del | |
| 45 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739042.2 | 3.1% | 1_8890del;9206_9991del | |
| 46 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739041.2 | 3.1% | 1_8914del;9230_10015del | |
| 47 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739039.2 | 3.1% | 1_8953del;9269_10054del | |
| 48 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739048.1 | 3.1% | 1_8956del;9272_10057del | |
| 49 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739040.1 | 3% | 1_9118del;9434_10219del | |
| 50 | human | 9208 | LRRFIP1 | LRR binding FLII interactin... | XR_001739046.1 | 3% | 1_9198del;9514_10299del | |
| 51 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529215.1 | 24% | 25.8% | (many diffs) |
| 52 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529216.2 | 23.4% | 25.2% | (many diffs) |
| 53 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_001111312.1 | 22.1% | 23.8% | (many diffs) |
| 54 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529214.1 | 20.7% | 22.3% | (many diffs) |
| 55 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319019.1 | 18.3% | 19.7% | (many diffs) |
| 56 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319017.1 | 17.5% | 18.9% | (many diffs) |
| 57 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319004.1 | 17.2% | 18.6% | (many diffs) |
| 58 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017319000.1 | 16.7% | 18% | (many diffs) |
| 59 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318999.1 | 16.6% | 17.8% | (many diffs) |
| 60 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318996.1 | 16.3% | 17.6% | (many diffs) |
| 61 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318987.1 | 16% | 17.3% | (many diffs) |
| 62 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318974.1 | 15.7% | 16.9% | (many diffs) |
| 63 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529213.3 | 15.7% | 16.9% | (many diffs) |
| 64 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529212.3 | 15.1% | 16.2% | (many diffs) |
| 65 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318969.1 | 15% | 16.2% | (many diffs) |
| 66 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_008515.4 | 15% | 16.2% | (many diffs) |
| 67 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318966.1 | 14.9% | 16.1% | (many diffs) |
| 68 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318965.1 | 14.7% | 15.8% | (many diffs) |
| 69 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318961.1 | 14.5% | 15.7% | (many diffs) |
| 70 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318960.1 | 14.4% | 15.5% | (many diffs) |
| 71 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | NM_001310732.1 | 14.2% | 15.3% | (many diffs) |
| 72 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_017318958.1 | 14.2% | 15.3% | (many diffs) |
| 73 | mouse | 16978 | Lrrfip1 | leucine rich repeat (in FLI... | XM_006529209.3 | 13.7% | 14.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 381
- ORF length:
- 315
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA TGTAATGGAC CTACAAAGGG ATGCCAACAG ACAGATCAGC GACCTCAAAT 121 TTAAACTTGC AAAATCTGAG CAAGAGATAA CTGCATTAGA ACAAAATGTA ATAAGGTTAG 181 AGAGTCAAGT ATCACGTTAC AAATCAGCGG CTGAAAATGC AGAAAAAATA GAAGATGAAC 241 TTAAGGCAGA AAAACGGAAA CTCCAAAGAG AGCTCCGCTC TGCATTGGAT AAAACAGAAG 301 AGCTCGAGGT GAGCAACGGC CACTTAGTGA AGCGTCTGGA AAAAATGAAA GCAAATCGGA 361 GTGCACTCTT GTCCCAGCAG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 421 attgcttatc aatttgttgc aacgaac