Construct: ORF ccsbBroadEn_11359

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014806.1_s300c1, BRDN0000394418
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE4A (9354)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9354 UBE4A ubiquitination factor E4A NM_001204077.2 100% 100%
2 human 9354 UBE4A ubiquitination factor E4A NM_004788.4 99.3% 99.2% 722_742del
3 mouse 140630 Ube4a ubiquitination factor E4A XM_006510003.3 92.2% 97.3% (many diffs)
4 mouse 140630 Ube4a ubiquitination factor E4A XM_011242396.2 92.2% 97.3% (many diffs)
5 mouse 140630 Ube4a ubiquitination factor E4A NM_001346698.1 90.6% 95.6% (many diffs)
6 mouse 140630 Ube4a ubiquitination factor E4A XM_006510002.3 90.6% 95.6% (many diffs)
7 mouse 140630 Ube4a ubiquitination factor E4A XM_011242394.2 90.6% 95.6% (many diffs)
8 mouse 140630 Ube4a ubiquitination factor E4A XM_011242395.2 90.6% 95.6% (many diffs)
9 mouse 140630 Ube4a ubiquitination factor E4A NM_145400.3 88.8% 93.8% (many diffs)
10 mouse 140630 Ube4a ubiquitination factor E4A XM_017313132.1 85.6% 90.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3267
ORF length:
3198
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GACAGACCAG GAGAATAACA ACAACATCTC AAGTAACCCC TTTGCTGCTC
121TTTTTGGCTC CCTGGCTGAT GCCAAACAGT TTGCGGCAAT CCAAAAAGAG CAGCTGAAGC
181AACAATCTGA TGAACTCCCA GCTAGCCCAG ATGACTCGGA TAATAGCGTG TCAGAGAGCC
241TGGATGAATT CGATTACTCT GTGGCTGAGA TTAGCCGCTC ATTCCGATCA CAGCAGGAAA
301TATGTGAGCA ACTCAACATC AATCACATGA TCCAAAGGAT CTTCCTTATT ACTCTGGACA
361ACAGTGATCC CAGCTTGAAA AGCGGGAATG GCATCCCTAG CCGTTGTGTG TATTTGGAAG
421AAATGGCAGT AGAGCTAGAA GATCAAGACT GGCTTGATAT GAGCAATGTT GAGCAGGCCC
481TCTTCGCTCG CTTATTACTT CAAGATCCAG GCAACCACTT AATTAACATG ACTTCTTCTA
541CAACGCTAAA TCTCTCTGCT GATCGAGATG CAGGAGAGAG GCACATTTTT TGTTACCTTT
601ACTCCTGCTT CCAGAGAGCC AAGGAAGAGA TTACCAAAGT TCCAGAGAAC CTGCTACCCT
661TTGCAGTGCA GTGCAGAAAC CTCACTGTGT CCAATACCCG AACAGTTCTT CTCACCCCAG
721AGATCTATGT TGACCAAAAC ATCCATGAGC AACTGGTAGA TTTGATGTTA GAAGCCATCC
781AGGGAGCCCA TTTTGAAGAT GTAACTGAGT TTCTGGAAGA GGTCATTGAA GCCTTGATAT
841TGGATGAGGA AGTTAGAACA TTTCCAGAAG TCATGATTCC AGTGTTTGAT ATTTTATTGG
901GCCGAATAAA AGATCTAGAG CTCTGTCAGA TCCTTTTGTA TGCATATCTG GATATTCTTC
961TCTATTTCAC TAGGCAAAAA GATATGGCAA AGGTTTTTGT AGAATACATT CAGCCCAAGG
1021ACCCTACCAA TGGGCAAATG TACCAGAAGA CCTTGCTGGG AGTAATTCTG AGTATCTCCT
1081GCTTATTAAA GACTCCGGGT GTTGTAGAAA ATCATGGCTA CTTTTTGAAT CCATCTCGTT
1141CCAGCCCCCA GGAGATCAAA GTACAGGAGG CCAACATCCA TCAGTTCATG GCTCAGTTCC
1201ACGAAAAGAT CTACCAGATG CTGAAGAACT TACTCCAGCT CTCTCCAGAA ACCAAACACT
1261GTATCTTGTC CTGGCTTGGA AACTGTTTGC ATGCAAATGC AGGCCGCACC AAGATTTGGG
1321CCAATCAGAT GCCAGAAATC TTTTTCCAAA TGTATGCCTC AGATGCTTTC TTTCTGAATC
1381TGGGTGCTGC TCTCCTGAAG CTATGCCAGC CATTTTGCAA ACCCAGATCC TCTCGGCTCC
1441TCACCTTTAA TCCCACATAC TGTGCCCTCA AGGAGTTGAA TGATGAAGAA CGAAAAATTA
1501AAAATGTACA CATGAGAGGT TTGGACAAAG AAACCTGTTT GATCCCAGCT GTGCAGGAGC
1561CGAAGTTTCC ACAGAACTAC AACCTTGTAA CAGAGAACCT TGCTCTGACA GAGTACACCT
1621TGTACTTGGG ATTTCACAGG TTGCATGATC AGATGGTAAA AATCAACCAA AATCTGCATC
1681GGCTGCAGGT TGCCTGGCGG GATGCTCAGC AAAGTTCTAG CCCTGCTGCT GACAATCTTC
1741GTGAGCAGTT TGAACGACTG ATGACCATCT ATCTTTCTAC CAAGACTGCC ATGACAGAGC
1801CACAAATGCT ACAAAACTGC CTAAACTTGC AGGTGTCCAT GGCTGTTCTA CTGGTTCAAC
1861TGGCCATAGG CAATGAGGGC TCACAGCCAA TAGAGCTAAC CTTTCCTTTG CCAGATGGCT
1921ACAGCTCTTT GGCTTATGTG CCAGAATTTT TTGCAGATAA CCTGGGTGAT TTTCTCATTT
1981TTCTCCGCCG CTTTGCCGAT GACATTTTGG AGACATCAGC AGATTCCCTG GAGCATGTCC
2041TTCACTTTAT CACCATTTTC ACTGGAAGCA TAGAAAGAAT GAAGAATCCC CACCTGAGGG
2101CCAAACTAGC AGAGGTGTTG GAAGCAGTGA TGCCCCACCT GGATCAGACC CCAAATCCCT
2161TGGTATCCAG TGTGTTCCAC CGGAAACGTG TGTTCTGCAA CTTTCAGTAT GCACCCCAAC
2221TTGCAGAGGC TCTAATCAAG GTTTTTGTGG ACATCGAATT TACAGGAGAC CCCCATCAAT
2281TTGAACAGAA GTTTAATTAC CGCCGTCCCA TGTATCCTAT CCTAAGATAC ATGTGGGGGA
2341CAGATACCTA TCGGGAGAGC ATTAAGGATT TGGCTGACTA TGCCTCTAAG AATTTAGAAG
2401CCATGAATCC CCCACTTTTC CTCCGCTTTC TTAACCTGCT AATGAATGAT GCCATCTTCC
2461TTTTGGATGA AGCCATACAG TATTTGAGCA AGATAAAGAT TCAGCAAATT GAGAAGGATC
2521GAGGTGAATG GGATAGTCTG ACTCCAGAAG CCCGCCGAGA AAAGGAGGCT GGCCTACAGA
2581TGTTTGGACA GCTGGCACGT TTCCATAACA TCATGTCCAA TGAAACAATC GGTACCCTTG
2641CCTTTCTCAC ATCAGAGATC AAGTCACTCT TTGTGCATCC CTTCCTGGCT GAGCGCATCA
2701TCTCCATGTT GAACTACTTC CTGCAACACC TGGTTGGCCC CAAGATGGGT GCCTTAAAAG
2761TCAAGGACTT CAGCGAATTT GACTTCAAAC CCCAGCAGCT TGTATCAGAT ATCTGCACTA
2821TCTACTTAAA TCTTGGGGAT GAGGAGAATT TCTGTGCCAC TGTGCCCAAG GATGGACGTT
2881CCTATTCCCC AACTCTCTTT GCACAGACAG TTCGAGTCTT GAAGAAAATA AATAAGCCTG
2941GGAATATGAT TATGGCTTTC AGCAACTTGG CAGAGAGAAT CAAGTCTCTT GCAGACCTCC
3001AACAACAGGA AGAGGAAACC TATGCAGATG CCTGTGATGA GTTCCTGGAT CCCATTATGA
3061GCACACTGAT GTGTGACCCT GTGGTGCTGC CATCTTCCAG AGTCACTGTG GATAGATCCA
3121CCATTGCAAG ACATTTGCTC AGTGACCAAA CAGATCCCTT TAACCGTAGT CCCCTCACCA
3181TGGACCAGAT CCGGCCAAAC ACAGAACTAA AAGAAAAAAT CCAACGGTGG CTTGCAGAGA
3241GGAAACAACA AAAGGAGCAA CTTGAATTGC CAACTTTCTT GTACAAAGTt ggcattataa
3301gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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