Construct: ORF ccsbBroadEn_11373

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006770.1_s300c1, BRDN0000390350
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A27 (9481)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9481 SLC25A27 solute carrier family 25 me... NM_001204052.1 99.7% 99.5% 225T>C;434C>T
2 human 9481 SLC25A27 solute carrier family 25 me... NM_001204051.2 80.5% 78.6% (many diffs)
3 human 9481 SLC25A27 solute carrier family 25 me... XM_005249483.2 77.9% 76.1% (many diffs)
4 human 9481 SLC25A27 solute carrier family 25 me... NM_004277.5 74.8% 73% (many diffs)
5 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317682.1 69.9% 73.3% (many diffs)
6 mouse 74011 Slc25a27 solute carrier family 25, m... NM_028711.3 65.7% 68.5% (many diffs)
7 mouse 74011 Slc25a27 solute carrier family 25, m... XM_011246657.2 64.9% 67.6% (many diffs)
8 mouse 74011 Slc25a27 solute carrier family 25, m... XM_006525001.3 64.1% 66.8% (many diffs)
9 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317680.1 57.1% 59.9% (many diffs)
10 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317679.1 56.5% 59.2% (many diffs)
11 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317678.1 55.8% 58.5% (many diffs)
12 mouse 74011 Slc25a27 solute carrier family 25, m... XM_006525003.3 51.7% 54.3% (many diffs)
13 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317681.1 51.7% 54.3% (many diffs)
14 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317685.1 39.1% 31.6% (many diffs)
15 mouse 74011 Slc25a27 solute carrier family 25, m... XM_017317683.1 36.8% 38.3% (many diffs)
16 mouse 74011 Slc25a27 solute carrier family 25, m... XR_001782122.1 9.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
801
ORF length:
735
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CGTCCCGGAG GAGGAGGAGA GGCTTTTGCC GCTGACCCAG AGATGGCCCC
121GAGCGAGCAA ATTCCTACTG TCCGGCTGCG CGGCTACCGT GGCCGAGCTA GCAACCTTTC
181CCCTGGATCT CACAAAAACT CGACTCCAAA TGCAAGGAGA AGCAGCTCTT GCTCGGTTGG
241GAGACGGTGC AAGAGAATCT GCCCCCTATA GGGGAATGGT GCGCACAGCC CTAGGGATCA
301TTGAAGAGGA AGGCTTTCTA AAGCTTTGGC AAGGAGTGAC ACCCGCCATT TACAGACACG
361TAGTGTATTC TGGAGGTCGA ATGGTCACAT ATGAACATCT CCGAGAGGTT GTGTTTGGCA
421AAAGTGAAGA TGAGCATTAT CCCCTTTGGA AATCAGTCAT TGGAGGGATG ATGGCTGGTG
481TTATTGGCCA GTTTTTAGTC AATCCAACTG ACCTAGTGAA GGTTCAGATG CAAATGGAAG
541GAAAAAGGAA ACTGGAAGGA AAACCATTGC GATTTCGTGG TGTACATCAT GCATTTGCAA
601AAATCTTAGC TGAAGGAGGA ATACGAGGGC TTTGGGCAGG CTGGGTACCC AATATACAAA
661GAGCAGCACT GGTGAATATG GGAGATTTAA CCACTTATGA TACAGTGAAA CACTACTTGG
721TATTGAATAC ACCACTTGAG GACAATATCA TGACTCACGG TTTATCAAGT GATCTGGTCG
781GATCTCACAA GGCCATCCAA TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
841attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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