Construct: ORF ccsbBroadEn_11396

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005316.1_s300c1, BRDN0000390765
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARHGEF10 (9639)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_011534770.2 32% 31.4% (many diffs)
2 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_011534768.1 28.6% 28% (many diffs)
3 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_011534767.2 28.5% 28% (many diffs)
4 human 9639 ARHGEF10 Rho guanine nucleotide exch... NM_001308152.2 28.5% 28% (many diffs)
5 human 9639 ARHGEF10 Rho guanine nucleotide exch... NM_014629.4 27.7% 27.2% (many diffs)
6 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_005266041.4 27.7% 27.2% (many diffs)
7 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_024447334.1 27.7% 27.2% (many diffs)
8 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_017014003.1 27.2% 26.7% (many diffs)
9 human 9639 ARHGEF10 Rho guanine nucleotide exch... NM_001308153.2 27.1% 26.6% (many diffs)
10 human 9639 ARHGEF10 Rho guanine nucleotide exch... XM_024447335.1 27.1% 26.6% (many diffs)
11 mouse 234094 Arhgef10 Rho guanine nucleotide exch... NM_001037736.2 24.4% 25.2% (many diffs)
12 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312672.1 23.9% 24.8% (many diffs)
13 mouse 234094 Arhgef10 Rho guanine nucleotide exch... NM_172751.3 23.7% 24.5% (many diffs)
14 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312670.1 23.2% 24.1% (many diffs)
15 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312671.1 23.2% 24.1% (many diffs)
16 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_006508772.3 23% 23.8% (many diffs)
17 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_006508770.3 23% 23.8% (many diffs)
18 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_006508771.3 23% 23.8% (many diffs)
19 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312673.1 23% 23.8% (many diffs)
20 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312668.1 22.6% 23.4% (many diffs)
21 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_006508768.3 22.6% 23.4% (many diffs)
22 mouse 234094 Arhgef10 Rho guanine nucleotide exch... XM_017312669.1 21.7% 22.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1206
ORF length:
1140
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GAATCCAGAA GAAGCAATTT ACGATGACGT TCCAAGGGAA AACTCAGACT
121CTGAACCAGA TGAAATGATT TATGATGATG TTGAGAATGG GGATGAAGGT GGAAACAGCT
181CCTTGGAATA CGGATGGAGT TCGAGTGAAT TTGAAAGTTA CGAAGAGCAG AGTGACTCGG
241AGTGCAAGAA TGGGATTCCC AGGTCCTTCC TGCGCAGCAA CCACAAAAAG CAAATGCAGA
301AGCTCGTGAA GGCCGCGAAG GACGGCACCA AGGACGGGCT GGAGAGGACC AGGGCAGCCG
361TGAAGAGGGG CCGCTCCTTC ATCAGGACCA AGTCTCTCAT CGCACAGGAT CACAGATCTT
421CTCTTGAGGA AGAACAGAAT TTGTTCATTG ATGTTGACTG CAAGCACCCG GAAGCCATCT
481TGACCCCGAT GCCCGAGGGT TTATCTCAGC AGCAGGTTGT AAGAAGATAT ATACTGGGTT
541CAGTTGTCGA CAGTGAAAAG AACTACGTAG ATGCTCTTAA GAGGATTTTG GAGCAATATG
601AGAAGCCGCT GTCTGAGATG GAGCCAAAGG TTCTGAGTGA GAGGAAGCTG AAGACGGTGT
661TCTACCGAGT CAAAGAGATC CTGCAGTGCC ACTCGCTATT TCAGATCGCG CTGGCCAGCC
721GCGTTTCCGA GTGGGACTCC GTGGAAATGA TAGGCGTTGT CTTCGTGGCT TCGTTTTCTA
781AGTCCATGGT GCTGGATGCA TACAGTGAAT ATGTGAACAA TTTCAGCACA GCCGTGGCAG
841TCCTCAAGAA AACATGTGCC ACAAAGCCCG CTTTTCTTGA ATTTTTAAAG CAGGAACAGG
901AGGCCAGCCC CGATCGAACC ACGCTCTACA GCCTGATGAT GAAGCCCATC CAGAGGTTCC
961CACAGTTCAT CCTCCTGCTC CAGGACATGC TGAAGAACAC CTCCAAAGGC CACCCCGACA
1021GGCTGCCTCT TCAGATGGCC CTGACAGAGC TCGAAACACT AGCAGAGAAG TTAAATGAAA
1081GAAAGAGAGA TGCTGATCAA CGCTGTGAAG TGAAGCAAAT AGCCAAAGCC ATAAACGAAA
1141GATACCTGAA CAAGGTTGAG AGAGGTTTTC TTCAACTCTA TTCCAAAATT ATTTTTGCTT
1201TGTGCTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1261gttgcaacga ac

Download FASTA (ORF) (Full)

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