Construct: ORF ccsbBroadEn_11424
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005449.1_s300c1, BRDN0000394420
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF518A (9849)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001278526.2 | 100% | 100% | |
| 2 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001278524.2 | 64.2% | 64.2% | 1_1590del |
| 3 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001278525.1 | 64.2% | 64.2% | 1_1590del |
| 4 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330732.2 | 64.2% | 64.2% | 1_1590del |
| 5 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330733.1 | 64.2% | 64.2% | 1_1590del |
| 6 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330734.1 | 64.2% | 64.2% | 1_1590del |
| 7 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330735.1 | 64.2% | 64.2% | 1_1590del |
| 8 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330736.1 | 64.2% | 64.2% | 1_1590del |
| 9 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330737.1 | 64.2% | 64.2% | 1_1590del |
| 10 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_001330738.1 | 64.2% | 64.2% | 1_1590del |
| 11 | human | 9849 | ZNF518A | zinc finger protein 518A | NM_014803.4 | 64.2% | 64.2% | 1_1590del |
| 12 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540406.2 | 64.2% | 64.2% | 1_1590del |
| 13 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540410.2 | 64.2% | 64.2% | 1_1590del |
| 14 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540412.2 | 64.2% | 64.2% | 1_1590del |
| 15 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540413.3 | 64.2% | 64.2% | 1_1590del |
| 16 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540415.2 | 64.2% | 64.2% | 1_1590del |
| 17 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540418.2 | 64.2% | 64.2% | 1_1590del |
| 18 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540419.2 | 64.2% | 64.2% | 1_1590del |
| 19 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_011540420.2 | 64.2% | 64.2% | 1_1590del |
| 20 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016986.1 | 64.2% | 64.2% | 1_1590del |
| 21 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016989.1 | 64.2% | 64.2% | 1_1590del |
| 22 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016992.1 | 64.2% | 64.2% | 1_1590del |
| 23 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016994.2 | 64.2% | 64.2% | 1_1590del |
| 24 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016998.1 | 64.2% | 64.2% | 1_1590del |
| 25 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_017016999.1 | 64.2% | 64.2% | 1_1590del |
| 26 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_024448265.1 | 64.2% | 64.2% | 1_1590del |
| 27 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_024448266.1 | 64.2% | 64.2% | 1_1590del |
| 28 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_024448267.1 | 64.2% | 64.2% | 1_1590del |
| 29 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_024448268.1 | 64.2% | 64.2% | 1_1590del |
| 30 | human | 9849 | ZNF518A | zinc finger protein 518A | XM_024448269.1 | 64.2% | 64.2% | 1_1590del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2928
- ORF length:
- 2859
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACTTTGATA TCTCAAAGGA ATAATATGCT TCAAACAATG GATTATGAGA 121 AAAGTGTATC TTCTTTGTCA GCAACATCAG AATTGGTTAC AGCATCAGTG AATTTGACCA 181 CAAAATTTGA AACAAGAGAT AATGTTGACT TCTGGGGAAA TCATCTCACT CAGAGTCACC 241 CCGAGGTATT AGGTACCACC ATTAAAAGTC CAGATAAAGT CAACTGTGTT GCCAAACCAA 301 ATGCATACAA CAGTGGAGAT ATGCATAATT ATTGCATTAA TTATGGCAAC TGTGAGTTAC 361 CTGTTGAATC CTCCAACCAA GGATCATTAC CTTTTCATAA TTACTCAAAA GTGAATAATT 421 CTAATAAACG TCGTAGGTTT TCAGGAACAG CAGTGTATGA AAACCCTCAA AGAGAATCTT 481 CATCCAGCAA AACAGTTGTC CAACAACCAA TTAGTGAATC ATTTTTATCA CTAGTGAGGC 541 AGGAGAGCTC AAAACCAGAT AGCCTATTAG CATCTATTAG CCTTTTAAAT GATAAAGATG 601 GAACTTTAAA AGCAAAATCT GAAATTGAAG AACAGTATGT TTTAGAAAAA GGACAAAACA 661 TTGATGGACA AAACCTGTAC AGTAATGAAA ATCAAAATTT AGAGTGTGCG ACTGAAAAAT 721 CTAAATGGGA AGACTTTTCT AATGTCGATT CACCTATGAT GCCTAGAATC ACATCTGTTT 781 TCTCTCTCCA GAGCCAACAG GCATCAGAAT TTCTGCCACC TGAAGTAAAC CAATTGCTTC 841 AGGATGTATT GAAAATAAAA CCTGATGTAA AACAAGACTC TAGTAACACT CCAAATAAAG 901 GCTTGCCACT TCATTGTGAC CAGTCATTTC AAAAACACGA GAGAGAAGGC AAAATTGTTG 961 AATCTTCGAA AGATTTCAAA GTGCAAGGCA TCTTCCCAGT TCCACCTGGC AGTGTGGGTA 1021 TTAATGTGCC TACAAATGAT TTGAATTTGA AATTTGGAAA AGAAAAACAA GTGTCATCAA 1081 TACCACAAGA TGTGAGAGAT TCAGAGAAGA TGCCTAGAAT TTCAGGTTTT GGCACATTAC 1141 TTAAGACTCA GTCAGATGCG ATAATAACAC AGCAGCTTGT AAAAGACAAA CTACGAGCCA 1201 CCACACAAAA TTTAGGTTCT TTTTATATGC AGAGTCCACT TTTAAATTCA GAACAAAAAA 1261 AAACTATAAT TGTTCAGACT TCAAAAGGAT TCTTAATACC ATTGAACATT ACTAACAAGC 1321 CTGGGCTACC AGTTATTCCT GGAAATGCAC TTCCATTGGT TAATTCACAA GGTATCCCTG 1381 CTTCTCTTTT TGTAAACAAG AAACCTGGGA TGGTTTTAAC ACTTAATAAT GGGAAACTTG 1441 AAGGTGTTTC CGCTGTCAAA ACCGAGGGTG CCCCAGCTCG TGGAACTGTG ACTAAGGAGC 1501 CTTGCAAAAC ACCTATTTTG AAGGTAGAAC CAAACAATAA TTGTCTTACA CCTGGACTTT 1561 GTTCCAGCAT TGGCAGTTGT TTGAGCATGA AAAGTAGCTC AGAAAATACT TTGCCATTAA 1621 AAGGCCCTTA CATTTTGAAA CCAACGAGTT CTGTGAAAGC TGTTCTTATT CCTAACATGC 1681 TATCTGAGCA ACAGAGCACT AAGTTGAATA TCTCCGATTC AGTAAAACAG CAGAATGAGA 1741 TTTTTCCAAA ACCACCTCTT TATACCTTCT TGCCTGATGG CAAACAAGCT GTTTTTTTAA 1801 AGTGTGTGAT GCCAAATAAA ACTGAGCTGC TTAAGCCCAA ATTAGTCCAA AATAGTACTT 1861 ATCAAAATAT ACAGCCAAAG AAACCTGAAG GAACACCACA AAGAATATTG CTGAAAATTT 1921 TTAACCCTGT TTTAAATGTG ACTGCTGCTA ATAATCTGTC AGTAAGCAAC TCTGCATCCT 1981 CATTGCAAAA AGACAACGTA CCATCTAATC AGATTATAGG AGGAGAGCAG AAAGAGCCAG 2041 AATCTAGAGA TGCCTTACCC TTCTTACTAG ATGACTTAAT GCCAGCAAAT GAAATTGTGA 2101 TAACTTCTAC TGCAACATGC CCAGAATCTT CTGAGGAACC AATATGTGTC AGTGACTGTT 2161 CAGAGTCCAG GGTATTAAGG TGTAAAACAA ATTGTAGAAT TGAGAGGAAC TTCAATAGAA 2221 AAAAGACTTC CAAAAAAATT TTTTCAAAAA CAAAAACTCA TGGAAGTAAA GACTCTGAAA 2281 CTGCCTTTGT ATCTAGAAAC AGAAACTGTA AACGAAAGTG TAGGGATAGT TACCAAGAAC 2341 CTCCAAGAAG AAAAGCAACA TTGCATAGAA AGTGTAAAGA AAAGGCAAAA CCTGAAGATG 2401 TCCGTGAAAC ATTTGGATTT AGCAGACCTA GGCTTTCAAA AGATTCCATC AGAACTTTGC 2461 GGCTTTTCCC TTTTAGTTCT AAACAGCTTG TGAAATGTCC TAGGAGAAAC CAACCAGTTG 2521 TAGTTTTGAA TCATCCTGAC GCAGATGCAC CAGAAGTAGT AAGTGTAATG AAAACTATTG 2581 CTAAATTTAA TGGACATGTA CTTAAGGTTT CATTGTCAAA AAGAACTATA AATGCTTTAC 2641 TGAAACCAGT TTGTTATAAC CCTCCTAAAA CAACTTATGA TGATTTTTCC AAGAGGCACA 2701 AAACATTTAA ACCTGTTAGT TCTGTGAAAG AAAGATTTGT GCTAAAATTA ACACTCAAAA 2761 AGACAAGCAA AAACAATTAC CAGATTGTGA AGACTACCTC TGAAAATATT TTGAAGGCTA 2821 AATTTAACTG TTGGTTTTGT GGTAGAGTAT TTGACAATCA GGATACTTGG GCTGGTCATG 2881 GGCAGAGACA TTTAATGGAA GCTACTCGGG ATTGGAACAT GTTAGAATTG CCAACTTTCT 2941 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac