Construct: ORF ccsbBroadEn_11446

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002139.1_s300c1, BRDN0000393359
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HDAC6 (10013)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10013 HDAC6 histone deacetylase 6 NM_001321226.2 87.4% 87.4% 1_456del
2 human 10013 HDAC6 histone deacetylase 6 NM_001321227.2 87.4% 87.4% 1_456del
3 human 10013 HDAC6 histone deacetylase 6 NM_001321228.2 87.4% 87.4% 1_456del
4 human 10013 HDAC6 histone deacetylase 6 NM_001321229.1 87.4% 87.4% 1_456del
5 human 10013 HDAC6 histone deacetylase 6 NM_006044.4 87.4% 87.4% 1_456del
6 human 10013 HDAC6 histone deacetylase 6 NM_001321225.2 86.4% 86.4% 1_498del
7 human 10013 HDAC6 histone deacetylase 6 XR_002958756.1 74.6% 1_535del;1869_1870ins134;3591_3957del
8 human 10013 HDAC6 histone deacetylase 6 NR_135591.1 74% 1_486del;2022_2023ins193;3483_3855del
9 human 10013 HDAC6 histone deacetylase 6 XR_246712.2 73.2% 1_535del;2071_2072ins193;3532_3898del
10 human 10013 HDAC6 histone deacetylase 6 XR_001755632.2 72.7% 1_562del;2098_2099ins193;3559_3925del
11 human 10013 HDAC6 histone deacetylase 6 XR_002958757.1 69.9% (many diffs)
12 human 10013 HDAC6 histone deacetylase 6 XR_002958755.1 69.5% 1_535del;2071_2072ins343;3382_3748del
13 human 10013 HDAC6 histone deacetylase 6 XM_017029187.1 37.1% 36.3% 1_498del;1832_1833ins134;1866_1867ins1687
14 human 10013 HDAC6 histone deacetylase 6 NR_135592.2 16.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3255
ORF length:
3189
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AACAACCCAG TACATGAATG AGGGAGAACT CCGTGTCCTA GCAGACACCT
121ACGACTCAGT TTATCTGCAT CCGAACTCAT ACTCCTGTGC CTGCCTGGCC TCAGGCTCTG
181TCCTCAGGCT GGTGGATGCG GTCCTGGGGG CTGAGATCCG GAATGGCATG GCCATCATTA
241GGCCTCCTGG ACATCACGCC CAGCACAGTC TTATGGATGG CTATTGCATG TTCAACCACG
301TGGCTGTGGC AGCCCGCTAT GCTCAACAGA AACACCGCAT CCGGAGGGTC CTTATCGTAG
361ATTGGGATGT GCACCACGGT CAAGGAACAC AGTTCACCTT CGACCAGGAC CCCAGTGTCC
421TCTATTTCTC CATCCACCGC TACGAGCAGG GTAGGTTCTG GCCCCACCTG AAGGCCTCTA
481ACTGGTCCAC CACAGGTTTC GGCCAAGGCC AAGGATATAC CATCAATGTG CCTTGGAACC
541AGGTGGGGAT GCGGGATGCT GACTACATTG CTGCTTTCCT GCACGTCCTG CTGCCAGTCG
601CCCTCGAGTT CCAGCCTCAG CTGGTCCTGG TGGCTGCTGG ATTTGATGCC CTGCAAGGGG
661ACCCCAAGGG TGAGATGGCC GCCACTCCGG CAGGGTTCGC CCAGCTAACC CACCTGCTCA
721TGGGTCTGGC AGGAGGCAAG CTGATCCTGT CTCTGGAGGG TGGCTACAAC CTCCGCGCCC
781TGGCTGAAGG CGTCAGTGCT TCGCTCCACA CCCTTCTGGG AGACCCTTGC CCCATGCTGG
841AGTCACCTGG TGCCCCCTGC CGGAGTGCCC AGGCTTCAGT TTCCTGTGCT CTGGAAGCCC
901TTGAGCCCTT CTGGGAGGTT CTTGTGAGAT CAACTGAGAC CGTGGAGAGG GACAACATGG
961AGGAGGACAA TGTAGAGGAG AGCGAGGAGG AAGGACCCTG GGAGCCCCCT GTGCTCCCAA
1021TCCTGACATG GCCAGTGCTA CAGTCTCGCA CAGGGCTGGT CTATGACCAA AATATGATGA
1081ATCACTGCAA CTTGTGGGAC AGCCACCACC CTGAGGTACC CCAGCGCATC TTGCGGATCA
1141TGTGCCGTCT GGAGGAGCTG GGCCTTGCCG GGCGCTGCCT CACCCTGACA CCGCGCCCTG
1201CCACAGAGGC TGAGCTGCTC ACCTGTCACA GTGCTGAGTA CGTGGGTCAT CTCCGGGCCA
1261CAGAGAAAAT GAAAACCCGG GAGCTGCACC GTGAGAGTTC CAACTTTGAC TCCATCTATA
1321TCTGCCCCAG TACCTTCGCC TGTGCACAGC TTGCCACTGG CGCTGCCTGC CGCCTGGTGG
1381AGGCTGTGCT CTCAGGAGAG GTTCTGAATG GTGCTGCTGT GGTGCGTCCC CCAGGACACC
1441ACGCAGAGCA GGATGCAGCT TGCGGTTTTT GCTTTTTCAA CTCTGTGGCT GTGGCTGCTC
1501GCCATGCCCA GACTATCAGT GGGCATGCCC TACGGATCCT GATTGTGGAT TGGGATGTCC
1561ACCACGGTAA TGGAACTCAG CACATGTTTG AGGATGACCC CAGTGTGCTA TATGTGTCCC
1621TGCACCGCTA TGATCATGGC ACCTTCTTCC CCATGGGGGA TGAGGGTGCC AGCAGCCAGA
1681TCGGCCGGGC TGCGGGCACA GGCTTCACCG TCAACGTGGC ATGGAACGGG CCCCGCATGG
1741GTGATGCTGA CTACCTAGCT GCCTGGCATC GCCTGGTGCT TCCCATTGCC TACGAGTTTA
1801ACCCAGAACT GGTGCTGGTC TCAGCTGGCT TTGATGCTGC ACGGGGGGAT CCGCTGGGGG
1861GCTGCCAGGT GTCACCTGAG GGTTATGCCC ACCTCACCCA CCTGCTGATG GGCCTTGCCA
1921GTGGCCGCAT TATCCTTATC CTAGAGGGTG GCTATAACCT GACATCCATC TCAGAGTCCA
1981TGGCTGCCTG CACTCGCTCC CTCCTTGGAG ACCCACCACC CCTGCTGACC CTGCCACGGC
2041CCCCACTATC AGGGGCCCTG GCCTCAATCA CTGAGACCAT CCAAGTCCAT CGCAGATACT
2101GGCGCAGCTT ACGGGTCATG AAGGTAGAAG ACAGAGAAGG ACCCTCCAGT TCTAAGTTGG
2161TCACCAAGAA GGCACCCCAA CCAGCCAAAC CTAGGTTAGC TGAGCGGATG ACCACACGAG
2221AAAAGAAGGT TCTGGAAGCA GGCATGGGGA AAGTCACCTC GGCATCATTT GGGGAAGAGT
2281CCACTCCAGG CCAGACTAAC TCAGAGACAG CTGTGGTGGC CCTCACTCAG GACCAGCCCT
2341CAGAGGCAGC CACAGGGGGA GCCACTCTGG CCCAGACCAT TTCTGAGGCA GCCATTGGGG
2401GAGCCATGCT GGGCCAGACC ACCTCAGAGG AGGCTGTCGG GGGAGCCACT CCGGACCAGA
2461CCACCTCAGA GGAGACTGTG GGAGGAGCCA TTCTGGACCA GACCACCTCA GAGGATGCTG
2521TTGGGGGAGC CACGCTGGGC CAGACTACCT CAGAGGAGGC TGTAGGAGGA GCTACACTGG
2581CCCAGACCAC CTCGGAGGCA GCCATGGAGG GAGCCACACT GGACCAGACT ACGTCAGAGG
2641AGGCTCCAGG GGGCACCGAG CTGATCCAAA CTCCTCTAGC CTCGAGCACA GACCACCAGA
2701CCCCCCCAAC CTCACCTGTG CAGGGAACTA CACCCCAGAT ATCTCCCAGT ACACTGATTG
2761GGAGTCTCAG GACCTTGGAG CTAGGCAGCG AATCTCAGGG GGCCTCAGAA TCTCAGGCCC
2821CAGGAGAGGA GAACCTACTA GGAGAGGCAG CTGGAGGTCA GGACATGGCT GATTCGATGC
2881TGATGCAGGG ATCTAGGGGC CTCACTGATC AGGCCATATT TTATGCTGTG ACACCACTGC
2941CCTGGTGTCC CCATTTGGTG GCAGTATGCC CCATACCTGC AGCAGGCCTA GACGTGACCC
3001AACCTTGTGG GGACTGTGGA ACAATCCAAG AGAATTGGGT GTGTCTCTCT TGCTATCAGG
3061TCTACTGTGG TCGTTACATC AATGGCCACA TGCTCCAACA CCATGGAAAT TCTGGACACC
3121CGCTGGTCCT CAGCTACATC GACCTGTCAG CCTGGTGTTA CTACTGTCAG GCCTATGTCC
3181ACCACCAGGC TCTCCTAGAT GTGAAGAACA TCGCCCACCA GAACAAGTTT GGGGAGGATA
3241TGCCCCACCC ACACTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
3301tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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