Construct: ORF ccsbBroadEn_11446
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002139.1_s300c1, BRDN0000393359
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HDAC6 (10013)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_001321226.2 | 87.4% | 87.4% | 1_456del |
| 2 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_001321227.2 | 87.4% | 87.4% | 1_456del |
| 3 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_001321228.2 | 87.4% | 87.4% | 1_456del |
| 4 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_001321229.1 | 87.4% | 87.4% | 1_456del |
| 5 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_006044.4 | 87.4% | 87.4% | 1_456del |
| 6 | human | 10013 | HDAC6 | histone deacetylase 6 | NM_001321225.2 | 86.4% | 86.4% | 1_498del |
| 7 | human | 10013 | HDAC6 | histone deacetylase 6 | XR_002958756.1 | 74.6% | 1_535del;1869_1870ins134;3591_3957del | |
| 8 | human | 10013 | HDAC6 | histone deacetylase 6 | NR_135591.1 | 74% | 1_486del;2022_2023ins193;3483_3855del | |
| 9 | human | 10013 | HDAC6 | histone deacetylase 6 | XR_246712.2 | 73.2% | 1_535del;2071_2072ins193;3532_3898del | |
| 10 | human | 10013 | HDAC6 | histone deacetylase 6 | XR_001755632.2 | 72.7% | 1_562del;2098_2099ins193;3559_3925del | |
| 11 | human | 10013 | HDAC6 | histone deacetylase 6 | XR_002958757.1 | 69.9% | (many diffs) | |
| 12 | human | 10013 | HDAC6 | histone deacetylase 6 | XR_002958755.1 | 69.5% | 1_535del;2071_2072ins343;3382_3748del | |
| 13 | human | 10013 | HDAC6 | histone deacetylase 6 | XM_017029187.1 | 37.1% | 36.3% | 1_498del;1832_1833ins134;1866_1867ins1687 |
| 14 | human | 10013 | HDAC6 | histone deacetylase 6 | NR_135592.2 | 16.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3255
- ORF length:
- 3189
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA AACAACCCAG TACATGAATG AGGGAGAACT CCGTGTCCTA GCAGACACCT 121 ACGACTCAGT TTATCTGCAT CCGAACTCAT ACTCCTGTGC CTGCCTGGCC TCAGGCTCTG 181 TCCTCAGGCT GGTGGATGCG GTCCTGGGGG CTGAGATCCG GAATGGCATG GCCATCATTA 241 GGCCTCCTGG ACATCACGCC CAGCACAGTC TTATGGATGG CTATTGCATG TTCAACCACG 301 TGGCTGTGGC AGCCCGCTAT GCTCAACAGA AACACCGCAT CCGGAGGGTC CTTATCGTAG 361 ATTGGGATGT GCACCACGGT CAAGGAACAC AGTTCACCTT CGACCAGGAC CCCAGTGTCC 421 TCTATTTCTC CATCCACCGC TACGAGCAGG GTAGGTTCTG GCCCCACCTG AAGGCCTCTA 481 ACTGGTCCAC CACAGGTTTC GGCCAAGGCC AAGGATATAC CATCAATGTG CCTTGGAACC 541 AGGTGGGGAT GCGGGATGCT GACTACATTG CTGCTTTCCT GCACGTCCTG CTGCCAGTCG 601 CCCTCGAGTT CCAGCCTCAG CTGGTCCTGG TGGCTGCTGG ATTTGATGCC CTGCAAGGGG 661 ACCCCAAGGG TGAGATGGCC GCCACTCCGG CAGGGTTCGC CCAGCTAACC CACCTGCTCA 721 TGGGTCTGGC AGGAGGCAAG CTGATCCTGT CTCTGGAGGG TGGCTACAAC CTCCGCGCCC 781 TGGCTGAAGG CGTCAGTGCT TCGCTCCACA CCCTTCTGGG AGACCCTTGC CCCATGCTGG 841 AGTCACCTGG TGCCCCCTGC CGGAGTGCCC AGGCTTCAGT TTCCTGTGCT CTGGAAGCCC 901 TTGAGCCCTT CTGGGAGGTT CTTGTGAGAT CAACTGAGAC CGTGGAGAGG GACAACATGG 961 AGGAGGACAA TGTAGAGGAG AGCGAGGAGG AAGGACCCTG GGAGCCCCCT GTGCTCCCAA 1021 TCCTGACATG GCCAGTGCTA CAGTCTCGCA CAGGGCTGGT CTATGACCAA AATATGATGA 1081 ATCACTGCAA CTTGTGGGAC AGCCACCACC CTGAGGTACC CCAGCGCATC TTGCGGATCA 1141 TGTGCCGTCT GGAGGAGCTG GGCCTTGCCG GGCGCTGCCT CACCCTGACA CCGCGCCCTG 1201 CCACAGAGGC TGAGCTGCTC ACCTGTCACA GTGCTGAGTA CGTGGGTCAT CTCCGGGCCA 1261 CAGAGAAAAT GAAAACCCGG GAGCTGCACC GTGAGAGTTC CAACTTTGAC TCCATCTATA 1321 TCTGCCCCAG TACCTTCGCC TGTGCACAGC TTGCCACTGG CGCTGCCTGC CGCCTGGTGG 1381 AGGCTGTGCT CTCAGGAGAG GTTCTGAATG GTGCTGCTGT GGTGCGTCCC CCAGGACACC 1441 ACGCAGAGCA GGATGCAGCT TGCGGTTTTT GCTTTTTCAA CTCTGTGGCT GTGGCTGCTC 1501 GCCATGCCCA GACTATCAGT GGGCATGCCC TACGGATCCT GATTGTGGAT TGGGATGTCC 1561 ACCACGGTAA TGGAACTCAG CACATGTTTG AGGATGACCC CAGTGTGCTA TATGTGTCCC 1621 TGCACCGCTA TGATCATGGC ACCTTCTTCC CCATGGGGGA TGAGGGTGCC AGCAGCCAGA 1681 TCGGCCGGGC TGCGGGCACA GGCTTCACCG TCAACGTGGC ATGGAACGGG CCCCGCATGG 1741 GTGATGCTGA CTACCTAGCT GCCTGGCATC GCCTGGTGCT TCCCATTGCC TACGAGTTTA 1801 ACCCAGAACT GGTGCTGGTC TCAGCTGGCT TTGATGCTGC ACGGGGGGAT CCGCTGGGGG 1861 GCTGCCAGGT GTCACCTGAG GGTTATGCCC ACCTCACCCA CCTGCTGATG GGCCTTGCCA 1921 GTGGCCGCAT TATCCTTATC CTAGAGGGTG GCTATAACCT GACATCCATC TCAGAGTCCA 1981 TGGCTGCCTG CACTCGCTCC CTCCTTGGAG ACCCACCACC CCTGCTGACC CTGCCACGGC 2041 CCCCACTATC AGGGGCCCTG GCCTCAATCA CTGAGACCAT CCAAGTCCAT CGCAGATACT 2101 GGCGCAGCTT ACGGGTCATG AAGGTAGAAG ACAGAGAAGG ACCCTCCAGT TCTAAGTTGG 2161 TCACCAAGAA GGCACCCCAA CCAGCCAAAC CTAGGTTAGC TGAGCGGATG ACCACACGAG 2221 AAAAGAAGGT TCTGGAAGCA GGCATGGGGA AAGTCACCTC GGCATCATTT GGGGAAGAGT 2281 CCACTCCAGG CCAGACTAAC TCAGAGACAG CTGTGGTGGC CCTCACTCAG GACCAGCCCT 2341 CAGAGGCAGC CACAGGGGGA GCCACTCTGG CCCAGACCAT TTCTGAGGCA GCCATTGGGG 2401 GAGCCATGCT GGGCCAGACC ACCTCAGAGG AGGCTGTCGG GGGAGCCACT CCGGACCAGA 2461 CCACCTCAGA GGAGACTGTG GGAGGAGCCA TTCTGGACCA GACCACCTCA GAGGATGCTG 2521 TTGGGGGAGC CACGCTGGGC CAGACTACCT CAGAGGAGGC TGTAGGAGGA GCTACACTGG 2581 CCCAGACCAC CTCGGAGGCA GCCATGGAGG GAGCCACACT GGACCAGACT ACGTCAGAGG 2641 AGGCTCCAGG GGGCACCGAG CTGATCCAAA CTCCTCTAGC CTCGAGCACA GACCACCAGA 2701 CCCCCCCAAC CTCACCTGTG CAGGGAACTA CACCCCAGAT ATCTCCCAGT ACACTGATTG 2761 GGAGTCTCAG GACCTTGGAG CTAGGCAGCG AATCTCAGGG GGCCTCAGAA TCTCAGGCCC 2821 CAGGAGAGGA GAACCTACTA GGAGAGGCAG CTGGAGGTCA GGACATGGCT GATTCGATGC 2881 TGATGCAGGG ATCTAGGGGC CTCACTGATC AGGCCATATT TTATGCTGTG ACACCACTGC 2941 CCTGGTGTCC CCATTTGGTG GCAGTATGCC CCATACCTGC AGCAGGCCTA GACGTGACCC 3001 AACCTTGTGG GGACTGTGGA ACAATCCAAG AGAATTGGGT GTGTCTCTCT TGCTATCAGG 3061 TCTACTGTGG TCGTTACATC AATGGCCACA TGCTCCAACA CCATGGAAAT TCTGGACACC 3121 CGCTGGTCCT CAGCTACATC GACCTGTCAG CCTGGTGTTA CTACTGTCAG GCCTATGTCC 3181 ACCACCAGGC TCTCCTAGAT GTGAAGAACA TCGCCCACCA GAACAAGTTT GGGGAGGATA 3241 TGCCCCACCC ACACTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 3301 tatcaatttg ttgcaacgaa c