Construct: ORF ccsbBroadEn_11460
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001301.1_s300c1, BRDN0000395034
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADGRG2 (10149)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001184834.2 | 98.3% | 98.3% | 154_201del |
| 2 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001184833.1 | 94.9% | 94.9% | 2667_2819del |
| 3 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001184836.1 | 94.1% | 94.1% | 152_153ins24;2643_2795del |
| 4 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_005756.4 | 93.6% | 93.6% | 153_191del;2706_2858del |
| 5 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001184837.2 | 93.5% | 93.5% | 211_212ins42;2625_2777del |
| 6 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001079858.3 | 93.4% | 93.4% | 154_201del;2715_2867del |
| 7 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | XM_006724455.3 | 93.4% | 93.4% | 154_201del;2715_2867del |
| 8 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | XM_011545434.1 | 93.4% | 93.4% | 154_201del;2715_2867del |
| 9 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | XM_011545435.2 | 93.4% | 93.4% | 154_201del;2715_2867del |
| 10 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001184835.2 | 92.7% | 92.7% | 152_153ins24;187_188ins42;2601_2753del |
| 11 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001079860.3 | 92% | 91.9% | (many diffs) |
| 12 | human | 10149 | ADGRG2 | adhesion G protein-coupled ... | NM_001079859.3 | 92% | 92% | 154_201del;259_260ins42;2673_2825del |
| 13 | mouse | 237175 | Adgrg2 | adhesion G protein-coupled ... | NM_001079848.2 | 77.6% | 75.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2919
- ORF length:
- 2850
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTTTTCTCT GTCAGGCAGT GTGGCCATGT TGGCAGAACT GAAGAAGTTT 121 TACTGACGTT CAAGATATTC CTTGTCATCA TTTGTCTTCA TGTCGTTCTG GTAACATCCC 181 TGGAAGAAGA TACTGATAAT TCCAGTTTGT CACCACCACC TGAGGTTGAA ACAACAAGCC 241 TCAATGATGT TACTTTAAGC TTACTCCCTT CAAACGAAAC AGAAAAAACT AAAATCACTA 301 TAGTAAAAAC CTTCAATGCA TCAGGCGTCA AACCCCAGAG AAATATCTGC AATTTGTCAT 361 CTATTTGCAA TGACTCAGCA TTTTTTAGAG GTGAGATCAT GTTTCAATAT GATAAAGAAA 421 GCACTGTTCC CCAGAATCAA CATATAACGA ATGGCACCTT AACTGGAGTC CTGTCTCTAA 481 GTGAATTAAA ACGCTCAGAG CTCAACAAAA CCCTGCAAAC CCTAAGTGAG ACTTACTTTA 541 TAATGTGTGC TACAGCAGAG GCCCAAAGCA CATTAAATTG TACATTCACA ATAAAACTGA 601 ATAATACAAT GAATGCATGT GCTGTAATAG CTGCTTTGGA AAGAGTAAAG ATTCGACCAA 661 TGGAACACTG CTGCTGTTCT GTCAGGATAC CCTGCCCTTC CTCCCCAGAA GAGTTGGAAA 721 AGCTTCAGTG TGACCTGCAG GATCCCATTG TCTGTCTTGC TGACCATCCA CGTGGCCCAC 781 CATTTTCTTC CAGCCAATCC ATCCCAGTGG TGCCTCGGGC CACTGTGCTT TCCCAGGTCC 841 CCAAAGCTAC CTCTTTTGCT GAGCCTCCAG ATTATTCACC TGTGACCCAC AATGTTCCCT 901 CTCCAATAGG GGAGATTCAA CCCCTTTCAC CCCAGCCTTC AGCTCCCATA GCTTCCAGCC 961 CTGCCATTGA CATGCCCCCA CAGTCTGAAA CGATCTCTTC CCCTATGCCC CAAACCCATG 1021 TCTCCGGCAC CCCACCTCCT GTGAAAGCCT CATTTTCCTC TCCCACCGTG TCTGCCCCTG 1081 CGAATGTCAA CACTACCAGC GCACCTCCTG TCCAGACAGA CATCGTCAAC ACCAGCAGTA 1141 TTTCTGATCT TGAGAACCAA GTGTTGCAGA TGGAGAAGGC TCTGTCCTTG GGCAGCCTGG 1201 AGCCTAACCT CGCAGGAGAA ATGATCAACC AAGTCAGCAG ACTCCTTCAT TCCCCGCCTG 1261 ACATGCTGGC CCCTCTGGCT CAAAGATTGC TGAAAGTAGT GGATGACATT GGCCTACAGC 1321 TGAACTTTTC AAACACGACT ATAAGTCTAA CCTCCCCTTC TTTGGCTCTG GCTGTGATCA 1381 GAGTGAATGC CAGTAGTTTC AACACAACTA CCTTTGTGGC CCAAGACCCT GCAAATCTTC 1441 AGGTTTCTCT GGAAACCCAA GCTCCTGAGA ACAGTATTGG CACAATTACT CTTCCTTCAT 1501 CGCTGATGAA TAATTTACCA GCTCATGACA TGGAGCTAGC TTCCAGGGTT CAGTTCAATT 1561 TTTTTGAAAC ACCTGCTTTG TTTCAGGATC CTTCCCTGGA GAACCTCTCT CTGATCAGCT 1621 ACGTCATATC ATCGAGTGTT GCAAACCTGA CCGTCAGGAA CTTGACAAGA AACGTGACAG 1681 TCACATTAAA GCACATCAAC CCGAGCCAGG ATGAGTTAAC AGTGAGATGT GTATTTTGGG 1741 ACTTGGGCAG AAATGGTGGC AGAGGAGGCT GGTCAGACAA TGGCTGCTCT GTCAAAGACA 1801 GGAGATTGAA TGAAACCATC TGTACCTGTA GCCATCTAAC AAGCTTCGGC GTTCTGCTGG 1861 ACCTATCTAG GACATCTGTG CTGCCTGCTC AAATGATGGC TCTGACGTTC ATTACATATA 1921 TTGGTTGTGG GCTTTCATCA ATTTTTCTGT CAGTGACTCT TGTAACCTAC ATAGCTTTTG 1981 AAAAGATCCG GAGGGATTAC CCTTCCAAAA TCCTCATCCA GCTGTGTGCT GCTCTGCTTC 2041 TGCTGAACCT GGTCTTCCTC CTGGACTCGT GGATTGCTCT GTATAAGATG CAAGGCCTCT 2101 GCATCTCAGT GGCTGTATTT CTTCATTATT TTCTCTTGGT CTCATTCACA TGGATGGGCC 2161 TAGAAGCATT CCATATGTAC CTGGCCCTTG TCAAAGTATT TAATACTTAC ATCCGAAAAT 2221 ACATCCTTAA ATTCTGCATT GTCGGTTGGG GGGTACCAGC TGTGGTTGTG ACCATCATCC 2281 TGACTATATC CCCAGATAAC TATGGGCTTG GATCCTATGG GAAATTCCCC AATGGTTCAC 2341 CGGATGACTT CTGCTGGATC AACAACAATG CAGTATTCTA CATTACGGTG GTGGGATATT 2401 TCTGTGTGAT ATTTTTGCTG AACGTCAGCA TGTTCATTGT GGTCCTGGTT CAGCTCTGTC 2461 GAATTAAAAA GAAGAAGCAA CTGGGAGCCC AGCGAAAAAC CAGTATTCAA GACCTCAGGA 2521 GTATCGCTGG CCTTACATTT TTACTGGGAA TAACTTGGGG CTTTGCCTTC TTTGCCTGGG 2581 GACCAGTTAA CGTGACCTTC ATGTATCTGT TTGCCATCTT TAATACCTTA CAAGGATTTT 2641 TCATATTCAT CTTTTACTGT GTGGCCAAAG AAAATGTCAG GAAGCAATGG AGGCGGTATC 2701 TTTGTTGTGG AAAGTTACGG CTGGCTGAAA ATTCTGGAAA TGCTTCTACA GAGAGGAATG 2761 GGGTCTCTTT TAGTGTTCAG AATGGAGATG TGTGCCTTCA CGATTTCACT GGAAAACAGC 2821 ACATGTTTAA CGAGAAGGAA GATTCCTGCA ATGGGAAAGG CCGTATGGCT CTCAGAAGGA 2881 CTTCAAAGCG GGGAAGCTTA CACTTTATTG AGCAAATGTT GCCAACTTTC TTGTACAAAG 2941 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac