Construct: ORF ccsbBroadEn_11469

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004302.1_s300c1, BRDN0000457347
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PATJ (10207)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10207 PATJ PATJ crumbs cell polarity c... XM_006710278.4 90.4% 89.9% (many diffs)
2 human 10207 PATJ PATJ crumbs cell polarity c... XM_005270347.2 90.2% 89.7% (many diffs)
3 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540469.3 87.2% 86.7% (many diffs)
4 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540470.2 80.2% 79.9% (many diffs)
5 human 10207 PATJ PATJ crumbs cell polarity c... XR_001736900.2 80% (many diffs)
6 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540468.3 77.4% 76.9% (many diffs)
7 human 10207 PATJ PATJ crumbs cell polarity c... XR_002957157.1 72.4% (many diffs)
8 human 10207 PATJ PATJ crumbs cell polarity c... XM_024448642.1 65.2% 64.8% (many diffs)
9 human 10207 PATJ PATJ crumbs cell polarity c... NM_176877.4 65.1% 64.7% (many diffs)
10 human 10207 PATJ PATJ crumbs cell polarity c... XM_016999999.2 63.2% 62.9% (many diffs)
11 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540467.3 63.2% 62.8% (many diffs)
12 human 10207 PATJ PATJ crumbs cell polarity c... XM_016999998.2 62.4% 62% (many diffs)
13 human 10207 PATJ PATJ crumbs cell polarity c... NM_001350145.2 62.3% 61.9% (many diffs)
14 human 10207 PATJ PATJ crumbs cell polarity c... XM_024448614.1 61.8% 61.5% (many diffs)
15 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540466.3 61.5% 61.1% (many diffs)
16 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540465.3 61.3% 61% (many diffs)
17 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540464.3 61% 60.7% (many diffs)
18 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540462.3 60.5% 60.2% (many diffs)
19 human 10207 PATJ PATJ crumbs cell polarity c... XM_011540463.2 60.5% 60.2% (many diffs)
20 human 10207 PATJ PATJ crumbs cell polarity c... XM_017000000.1 44.9% 44.5% (many diffs)
21 human 10207 PATJ PATJ crumbs cell polarity c... XM_017000001.1 11.8% 11.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3612
ORF length:
3543
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTGAAAAT CCTGCTACAG ATAAACTGCA GGTGCTGCAG GTACTTGATC
121GCCTGAAAAT GAAATTGCAG GAGAAGGGTG ACACGTCGCA GAATGAGAAG TTATCTATGT
181TTTATGAGAC ACTAAAGAGT CCTCTCTTCA ACCAGATACT CACACTTCAG CAGTCCATCA
241AGCAACTGAA GGGTCAACTC AACCATATAC CCTCAGATTG TTCAGCCAAC TTTGATTTTT
301CTAGGAAAGG TTTGTTAGTG TTCACAGATG GTTCCATTAC TAATGGAAAT GTCCACAGGC
361CCTCTAATAA CTCGACTGTA TCTGGGTTAT TTCCGTGGAC CCCGAAGTTG GGAAATGAAG
421ACTTTAACTC AGTCATTCAA CAGATGGCTC AGGGCCGGCA AATTGAATAT ATAGATATAG
481AACGGCCTTC AACTGGAGGC CTTGGATTCA GTGTGGTGGC CCTCAGAAGT CAAAATCTCG
541GAAAAGTTGA TATCTTCGTG AAGGATGTCC AGCCAGGGAG TGTAGCAGAC AGGGATCAAA
601GATTAAAGGA AAATGATCAA ATATTGGCCA TTAATCACAC GCCATTGGAT CAGAACATTT
661CCCATCAGCA AGCAATTGCA TTATTACAAC AAACCACTGG ATCTTTGAGA CTGATTGTGG
721CCAGGGAACC AGTCCACACA AAAAGCAGTA CTTCTAGCAG CCTAAATGAT ACAACTCTGC
781CTGAAACAGT TTGTTGGGGC CATGTTGAAG AGGTTGAGCT CATTAATGAT GGCTCTGGAC
841TAGGTTTTGG AATAGTTGGA GGAAAAACAA GTGGCGTGGT TGTGAGGACT ATAGTTCCTG
901GAGGATTAGC AGATCGAGAT GGAAGACTCC AGACAGGGGA CCACATCTTG AAGATTGGTG
961GCACAAACGT GCAGGGAATG ACCAGTGAGC AAGTTGCACA AGTTCTAAGG AACTGTGGGA
1021ATTCAGTCAG GATGCTCGTT GCTAGAGATC CAGCTGGTGA CATTTCAGTC ACCCCCCCTG
1081CCCCTGCAGC CTTACCTGTT GCCCTGCCTA CTGTAGCCAG CAAGGGCCCT GGTTCTGACA
1141GTTCTCTTTT TGAAACTTAT AATGTTGAGC TTGTGAGAAA AGATGGGCAG AGTCTTGGAA
1201TTAGAATTGT TGGCTATGTT GGAACATCTC ATACAGGGGA AGCTTCAGGG ATTTATGTGA
1261AAAGTGTAAT ACCTGGCAGT GCTGCGTACC ACAATGGCCA CATTCAAGTG AATGACAAAA
1321TAGTTGCTGT CGATGGCGTG AACATTCAGG GTTTTGCCAA CCATGATGTT GTTGAAGTAT
1381TACGAAATGC AGGGCAGGTG GTACACCTAA CCCTAGTTCG AAGGAAGACA TCCTCATCTA
1441CTTCTCCACT TGAACCACCT TCAGACAGAG GAACTGTTGT AGAACCACTG AAACCACCAG
1501CTCTCTTTCT AACTGGAGCA GTGGAAACTG AAACTAATGT GGATGGTGAA GATGAGGAAA
1561TTAAAGAAAG AATTGATACT TTAAAAAATG ACAACATACA AGCCTTAGAA AAATTGGAAA
1621AAGTCCCAGA CTCTCCAGAA AATGAGCTGA AATCCAGATG GGAAAACCTG TTGGGTCCTG
1681ATTATGAAGT AATGGTTGCT ACTTTGGACA CACAGATTGC AGATGATGCT GAGTTACAGA
1741AATATTCAAA GCTGCTGCCT ATTCACACTC TGAGGCTTGG TGTGGAAGTG GATTCCTTTG
1801ATGGGCACCA TTATATTTCT TCAATTGTTT CTGGTGGTCC TGTTGATACA TTGGGTCTCC
1861TACAGCCAGA AGATGAGCTG CTTGAGGTCA ATGGCATGCA GCTTTATGGA AAATCTCGCC
1921GAGAAGCAGT CTCCTTTCTT AAAGAAGTGC CACCCCCTTT TACTTTGGTT TGCTGTCGGA
1981GGTTGTTTGA TGATGAAGCT TCTGTAGATG AACCAAGGCG CACTGAAACC TCTCTTCCTG
2041AGACAGAGGT TGACCACAAT ATGGATGTCA ATACTGAAGA AGATGATGAT GGGGAATTAG
2101CACTGTGGTC CCCTGAAGTC AAGATTGTTG AACTAGTAAA AGATTGTAAA GGTTTGGGAT
2161TCAGCATTTT GGATTACCAG GACCCTTTAG ATCCTACAAG ATCAGTGATT GTGATCCGCT
2221CCCTGGTAGC AGATGGTGTA GCAGAAAGAA GTGGGGGACT ATTACCTGGA GACCGCCTGG
2281TCTCAGTCAA TGAATACTGT TTGGACAACA CCTCACTTGC TGAAGCTGTG GAAATATTGA
2341AAGCTGTGCC ACCAGGCCTA GTACACCTTG GCATCTGTAA GCCTTTGGTG GAAGATAATG
2401AAGAAGAAAG TTGTTATATT TTACATTCAA GCAGTAATGA AGACAAGACT GAATTTTCAG
2461GAACAATTCA TGATATAAAT TCATCTTTAA TACTCGAAGC ACCCAAGGGA TTTAGAGATG
2521AACCATATTT TAAAGAAGAA CTTGTGGATG AACCATTTCT AGATCTGGGA AAGTCTTTCC
2581ATTCCCAACA AAAAGAGATA GAGCAAAGCA AGGAGGCCTG GGAGATGCAT GAATTTCTGA
2641CTCCTAGATT GCAGGAAATG GATGAAGAAA GAGAAATGCT TGTTGATGAA GAATATGAGT
2701TATATCAAGA TCCCTCACCA TCCATGGAGT TGTATCCCTT GTCGCACATT CAAGAGGCCA
2761CTCCTGTGCC CTCTGTGAAT GAACTTCACT TTGGTACACA GTGGTTGCAT GATAATGAAC
2821CATCCGAGTC TCAAGAGGCA AGAACCGGGA GGACTGTCTA TTCCCAGGAG GCACAGCCGT
2881ATGGCTATTG CCCTGAAAAT GTGATGAAAG AAAATTTTGT CATGGAGTCC CTACCATCTG
2941TACCATCAAC TGAAGGAAAC AGTCAACAAG GCAGATTTGA CGACCTGGAA AATCTTAATT
3001CATTAGCAAA AACTAGTCTG GATTTAGGCA TGATCCCGAA TGATGTCCAA GGTCCTAGCT
3061TGCTCATTGA CCTTCCTGTT GTGGCTCAAA GGAGGGAGCA AGAAGATTTG CCTTTATATC
3121AACACCAAGC GACACGAGTT ATTTCCAAGG CCTCAGCATA CACAGGAATG TTGTCTTCTA
3181GATATGCCAC TGATACATGT GAGTTACCTG AGAGAGAAGA AGGCGAAGGA GAAGAAACTC
3241CAAATTTTAG CCACTGGGGT CCACCGAGAA TTGTTGAGAT TTTTAGAGAA CCCAATGTGT
3301CTCTTGGGAT CAGTATTGTT GGTGGACAAA CTGTTATAAA ACGTCTAAAG AATGGAGAGG
3361AGCTTAAAGG TATATTCATC AAACAAGTTT TAGAAGACAG TCCAGCAGGG AAGACGAACG
3421CACTTAAAAC TGGAGATAAA ATACTTGAGG TGTCTGGAGT AGATTTGCAG AATGCCTCAC
3481ACAGCGAAGC AGTTGAGGCC ATTAAGAATG CAGGAAACCC TGTGGTGTTC ATTGTTCAGA
3541GTTTGTCATC CACTCCAGCC TGGGTGACAG AGCAAGACTC TGTCTCGAAA AAGAAAAAAA
3601ACCATGAAGG ATTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat
3661caatttgttg caacgaac

Download FASTA (ORF) (Full)

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