Construct: ORF ccsbBroadEn_11544
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005362.1_s300c1, BRDN0000457348
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CHL1 (10752)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10752 | CHL1 | cell adhesion molecule L1 like | NM_001253387.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 2 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_011533294.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 3 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_011533295.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 4 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005569.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 5 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005570.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 6 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005571.1 | 99.9% | 99.8% | 859A>G;3100A>G;3165T>C |
| 7 | human | 10752 | CHL1 | cell adhesion molecule L1 like | NM_006614.4 | 98.6% | 98.4% | (many diffs) |
| 8 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_006712938.1 | 98.6% | 98.4% | (many diffs) |
| 9 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_006712939.3 | 98.6% | 98.4% | (many diffs) |
| 10 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_006712940.3 | 98.6% | 98.4% | (many diffs) |
| 11 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_011533292.1 | 98.6% | 98.4% | (many diffs) |
| 12 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005566.1 | 98.6% | 98.4% | (many diffs) |
| 13 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005567.1 | 98.6% | 98.4% | (many diffs) |
| 14 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005568.1 | 98.6% | 98.4% | (many diffs) |
| 15 | human | 10752 | CHL1 | cell adhesion molecule L1 like | NM_001253388.1 | 94.3% | 94.1% | 680_727del;907A>G;3094_3095ins159 |
| 16 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_011533296.1 | 94.3% | 94.1% | 680_727del;907A>G;3094_3095ins159 |
| 17 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005572.1 | 94.3% | 94.1% | 680_727del;907A>G;3094_3095ins159 |
| 18 | human | 10752 | CHL1 | cell adhesion molecule L1 like | XM_017005573.1 | 94.3% | 94.1% | 680_727del;907A>G;3094_3095ins159 |
| 19 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | NM_007697.2 | 84.6% | 84.7% | (many diffs) |
| 20 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505472.3 | 84.6% | 84.7% | (many diffs) |
| 21 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_017321375.1 | 84.6% | 84.7% | (many diffs) |
| 22 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_017321376.1 | 84.6% | 84.7% | (many diffs) |
| 23 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505467.2 | 83.5% | 83.6% | (many diffs) |
| 24 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505468.3 | 83.5% | 83.6% | (many diffs) |
| 25 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505469.2 | 83.5% | 83.6% | (many diffs) |
| 26 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505470.2 | 83.5% | 83.6% | (many diffs) |
| 27 | mouse | 12661 | Chl1 | cell adhesion molecule L1-like | XM_006505471.3 | 83.5% | 83.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3693
- ORF length:
- 3624
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGCCGCTT TTACTTGGAA GAGGACTAAT CGTATATCTA ATGTTCCTCC 121 TGTTAAAATT CTCAAAAGCA ATTGAAATAC CATCTTCAGT TCAACAGGTT CCAACAATCA 181 TAAAACAGTC AAAAGTCCAA GTTGCCTTTC CCTTCGATGA GTATTTTCAA ATTGAATGTG 241 AAGCTAAAGG AAATCCAGAA CCAACATTTT CGTGGACTAA GGATGGCAAC CCTTTTTATT 301 TCACTGACCA TCGGATAATT CCATCGAACA ATTCAGGAAC ATTCAGGATC CCAAACGAGG 361 GGCACATATC TCACTTTCAA GGGAAATACC GCTGCTTTGC TTCAAATAAA CTGGGAATCG 421 CTATGTCAGA AGAAATAGAA TTTATAGTTC CAAGTGTTCC AAAATTCCCA AAAGAAAAAA 481 TTGACCCTCT TGAAGTGGAG GAGGGAGATC CAATTGTCCT CCCATGCAAT CCTCCCAAAG 541 GCCTCCCACC TTTACACATT TATTGGATGA ATATTGAATT AGAACACATC GAACAAGATG 601 AAAGAGTATA CATGAGCCAA AAGGGAGATC TATACTTCGC AAACGTGGAA GAAAAGGACA 661 GTCGCAATGA CTACTGTTGC TTTGCTGCAT TTCCAAGATT AAGGACTATT GTACAGAAAA 721 TGCCAATGAA ACTAACAGTT AACAGTTCAA ATTCCATCAA GCAAAGAAAA CCCAAACTGC 781 TGTTGCCTCC CACTGAGAGT GGCAGTGAGT CTTCAATTAC CATCCTCAAA GGGGAAATCT 841 TGCTGCTTGA GTGTTTTGCT GAAGGCTTGC CAACTCCACA GGTTGATTGG AACAAAATTG 901 GTGGTGACTT ACCAAAGGGG AGAGAAGCAA AAGAAAATTA TGGCAAGACT TTGAAGATAG 961 AGAATGTCTC CTACCAGGAC AAAGGAAATT ATCGCTGCAC AGCCAGCAAT TTCTTGGGAA 1021 CAGCCACTCA CGATTTTCAC GTTATAGTAG AAGAGCCTCC TCGCTGGACA AAGAAGCCTC 1081 AGAGTGCTGT GTATAGCACC GGAAGCAATG GCATCTTGTT ATGTGAGGCT GAAGGAGAAC 1141 CTCAACCCAC AATCAAGTGG AGAGTCAATG GCTCCCCAGT TGACAATCAT CCATTTGCTG 1201 GTGATGTTGT CTTCCCCAGG GAAATCAGTT TTACCAACCT TCAACCAAAT CATACTGCTG 1261 TGTACCAGTG TGAAGCCTCA AATGTCCATG GAACTATCCT TGCCAATGCC AATATTGATG 1321 TTGTGGATGT CCGTCCATTG ATACAAACCA AAGATGGAGA AAATTACGCT ACAGTGGTTG 1381 GGTACAGTGC TTTCTTACAT TGCGAGTTCT TTGCTTCACC TGAGGCAGTC GTGTCCTGGC 1441 AGAAGGTGGA AGAAGTGAAA CCCCTGGAGG GCAGGCGGTA TCATATCTAT GAAAATGGCA 1501 CATTGCAGAT CAACAGAACC ACCGAAGAAG ATGCTGGGTC TTACTCATGT TGGGTAGAAA 1561 ATGCTATAGG AAAAACTGCA GTCACAGCCA ATTTGGATAT TAGAAATGCT ACAAAACTTA 1621 GAGTTTCTCC TAAGAATCCT CGTATCCCCA AATTGCATAT GCTTGAATTA CATTGTGAAA 1681 GCAAATGTGA CTCACATTTG AAACACAGTT TGAAGTTGTC CTGGAGTAAA GATGGAGAAG 1741 CCTTTGAAAT TAATGGCACA GAAGATGGCA GGATAATTAT TGATGGAGCT AATTTGACCA 1801 TATCTAATGT AACTTTAGAG GACCAAGGTA TTTACTGCTG TTCAGCTCAT ACTGCTCTAG 1861 ACAGTGCTGC CGATATAACT CAAGTAACTG TTCTTGATGT TCCGGATCCA CCAGAAAACC 1921 TTCACTTGTC TGAAAGACAG AACAGGAGTG TTCGGCTGAC CTGGGAAGCT GGAGCTGACC 1981 ACAACAGCAA TATTAGCGAG TATATTGTTG AATTTGAAGG AAACAAAGAA GAGCCTGGAA 2041 GGTGGGAGGA ACTGACCAGA GTCCAAGGAA AGAAAACCAC AGTTATCTTA CCTTTGGCTC 2101 CATTTGTGAG ATACCAGTTC AGGGTCATAG CCGTGAACGA AGTAGGGAGA AGTCAGCCTA 2161 GCCAGCCGTC AGACCATCAT GAAACACCAC CAGCAGCTCC AGATAGGAAT CCACAAAACA 2221 TAAGGGTTCA AGCCTCTCAA CCCAAGGAAA TGATTATAAA GTGGGAGCCT TTGAAATCCA 2281 TGGAGCAGAA TGGACCAGGC CTAGAGTACA GAGTGACCTG GAAGCCACAG GGAGCCCCAG 2341 TGGAGTGGGA AGAAGAAACA GTCACAAACC ACACATTGCG GGTGATGACG CCTGCTGTCT 2401 ATGCCCCTTA TGATGTCAAG GTCCAGGCTA TCAATCAACT AGGATCTGGG CCTGACCCTC 2461 AGTCAGTGAC TCTCTATTCT GGAGAAGACT ATCCTGATAC AGCTCCAGTG ATCCATGGGG 2521 TGGACGTTAT AAACAGTACA TTAGTTAAAG TTACCTGGTC AACAGTTCCA AAGGACAGAG 2581 TACATGGACG TCTGAAAGGC TATCAGATAA ATTGGTGGAA AACAAAAAGT CTGTTGGATG 2641 GAAGAACACA TCCCAAAGAA GTGAACATTC TAAGATTTTC AGGACAAAGA AACTCTGGAA 2701 TGGTTCCTTC CTTAGATGCC TTTAGTGAAT TTCATTTAAC AGTCTTAGCC TATAACTCTA 2761 AAGGAGCTGG TCCTGAAAGT GAGCCTTATA TATTTCAAAC ACCAGAAGGA GTACCTGAAC 2821 AGCCAACTTT TCTAAAGGTC ATCAAAGTTG ATAAAGACAC TGCCACTTTA TCTTGGGGAC 2881 TACCTAAGAA ATTAAATGGA AACTTAACTG GCTATCTTTT GCAATATCAG ATAATAAATG 2941 ACACCTACGA GATTGGAGAA TTAAATGATA TTAACATTAC AACTCCATCA AAGCCCAGCT 3001 GGCACCTCTC AAACCTGAAT GCAACTACCA AGTACAAATT CTACTTGAGG GCTTGCACTT 3061 CACAGGGCTG TGGAAAACCG ATCACGGAGG AAAGCTCCAC CTTAGGAGAA GGGAGTAAAG 3121 GTATCGGGAA GATATCAGGA GTAAATCTTA CTCAAAAGAC TCACCCAGTA GAGGTATTTG 3181 AGCCGGGAGC TGAACATATA GTTCGCCTAA TGACTAAGAA TTGGGGCGAT AACGATAGCA 3241 TTTTTCAAGA TGTAATTGAG ACAAGAGGGA GAGAATATGC TGGTTTATAT GATGACATCT 3301 CCACTCAAGG CTGGTTTATT GGACTGATGT GTGCGATTGC TCTTCTCACA CTACTATTAT 3361 TAACTGTTTG CTTTGTGAAG AGGAATAGAG GTGGAAAGTA CTCAGTTAAA GAAAAGGAAG 3421 ATTTGCATCC AGACCCAGAA ATTCAGTCAG TAAAAGATGA AACCTTTGGT GAATACAGTG 3481 ACAGTGATGA AAAGCCTCTC AAAGGAAGCC TTCGGTCCCT TAATAGGGAT ATGCAGCCTA 3541 CTGAAAGTGC TGACAGCTTA GTCGAATACG GAGAGGGAGA CCATGGTCTC TTCAGTGAAG 3601 ATGGATCATT TATTGGTGCC TACGCTGGAT CTAAGGAGAA GGGATCTGTT GAAAGCAATG 3661 GAAGTTCTAC AGCAACTTTT CCCCTTCGGG CATTGCCAAC TTTCTTGTAC AAAGTTGGca 3721 ttataagaaa gcattgctta tcaatttgtt gcaacgaac