Construct: ORF ccsbBroadEn_11562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008269.1_s300c1, BRDN0000390063
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CFHR3 (10878)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10878 CFHR3 complement factor H related 3 NM_001166624.1 65.8% 56.3% (many diffs)
2 human 10878 CFHR3 complement factor H related 3 XR_241062.3 59.7% (many diffs)
3 human 10878 CFHR3 complement factor H related 3 NM_021023.5 58.4% 56.6% (many diffs)
4 human 10878 CFHR3 complement factor H related 3 XR_426757.2 52.7% (many diffs)
5 human 10877 CFHR4 complement factor H related 4 XM_017000113.1 38.5% 29.4% (many diffs)
6 human 10877 CFHR4 complement factor H related 4 XM_017000112.1 37.7% 28.8% (many diffs)
7 human 10877 CFHR4 complement factor H related 4 XM_017000111.1 34% 26% (many diffs)
8 human 10877 CFHR4 complement factor H related 4 XM_017000110.1 33.9% 26% (many diffs)
9 human 10877 CFHR4 complement factor H related 4 NM_006684.5 32.4% 28.4% (many diffs)
10 human 10878 CFHR3 complement factor H related 3 XR_001736938.1 32.4% (many diffs)
11 human 10878 CFHR3 complement factor H related 3 XR_002958987.1 32.1% (many diffs)
12 human 10877 CFHR4 complement factor H related 4 NM_001201551.2 30.6% 23.3% (many diffs)
13 human 10877 CFHR4 complement factor H related 4 NM_001201550.3 30.5% 23.3% (many diffs)
14 human 10877 CFHR4 complement factor H related 4 XM_006711129.3 29.3% 22.1% (many diffs)
15 human 3075 CFH complement factor H NM_001014975.2 27.5% 22.9% (many diffs)
16 human 3075 CFH complement factor H XM_017001108.2 27.3% 22.9% (many diffs)
17 human 10878 CFHR3 complement factor H related 3 XR_001736937.1 26.4% (many diffs)
18 human 3075 CFH complement factor H NM_000186.4 14.2% 11.5% (many diffs)
19 human 3075 CFH complement factor H XR_001737134.2 12.9% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
651
ORF length:
585
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT GTTACTAATC AATGTCGTTC TGACCTTGTG GGTTTCCTGT GCTAATGGAC
121AAGTGAAACC TTGTGATTTT CCAGACATTA AACATGGAGG TCTATTTCAT GAGAATATGC
181GTAGACCATA CTTTCCAGTA GCTGTAGGAA AATATTACTC CTATTACTGT GATGAACATT
241TTGAGACTCC TTCAGGAAGT TACTGGGATT ACATTCATTG CACACAAAAT GGGTGGTCAC
301CAGCAGTACC ATGTCTCAGA AAATGTTATT TTCCTTATTT GGAAAATGGA TATAATCAAA
361ATTATGGAAG AAAGTTTGTA CAGGGTAACT CTACAGAAGT TGCCTGCCAT CCTGGCTACG
421GTCTTCCAAA AGCGCAGACC ACAGTTACAT GTACGGAGAA AGGCTGGTCT CCTACTCCCA
481GATGCATCCG TGTCAGAACA TGCTCAAAAT CAGATATAGA AATTGAAAAT GGATTCATTT
541CCGAATCTTC CTCTATTTAT ATTTTAAATA AAGAAATACA ATATAAATGT AAACCAGGAT
601ATGCAACAGC AGATGGAAAT TCTTCATATA TGGTTTTTTG CATTTCTTAT TACCCAACTT
661TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)