Construct: ORF ccsbBroadEn_11571

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008884.1_s300c1, BRDN0000385499
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EHMT2 (10919)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10919 EHMT2 euchromatic histone lysine ... NM_001318833.1 99.2% 99.3% 84A>G;1822_1842del
2 human 10919 EHMT2 euchromatic histone lysine ... NM_006709.5 82.6% 82.7% 1_627del;711A>G
3 human 10919 EHMT2 euchromatic histone lysine ... XM_006714976.1 82.2% 82.2% 1_627del;711A>G;2449_2469del
4 human 10919 EHMT2 euchromatic histone lysine ... NM_025256.7 79.8% 79.9% 1_627del;711A>G;1113_1114ins102
5 human 10919 EHMT2 euchromatic histone lysine ... XM_017010202.1 79.4% 79.4% (many diffs)
6 human 10919 EHMT2 euchromatic histone lysine ... NM_001363689.1 78.9% 79% 1_798del;882A>G
7 human 10919 EHMT2 euchromatic histone lysine ... XM_006714974.1 78.5% 78.5% 1_798del;882A>G;2620_2640del
8 human 10919 EHMT2 euchromatic histone lysine ... NM_001289413.1 76.2% 76.3% 1_798del;882A>G;1284_1285ins102
9 human 10919 EHMT2 euchromatic histone lysine ... XM_006714975.1 75.8% 75.9% (many diffs)
10 mouse 110147 Ehmt2 euchromatic histone lysine ... NM_001286575.1 73.1% 80% (many diffs)
11 mouse 110147 Ehmt2 euchromatic histone lysine ... XM_006523482.3 72.5% 79.3% (many diffs)
12 mouse 110147 Ehmt2 euchromatic histone lysine ... NM_147151.2 70.3% 77.2% (many diffs)
13 mouse 110147 Ehmt2 euchromatic histone lysine ... NM_145830.2 69.8% 76.4% (many diffs)
14 mouse 110147 Ehmt2 euchromatic histone lysine ... XM_011246248.1 69.2% 75.8% (many diffs)
15 mouse 110147 Ehmt2 euchromatic histone lysine ... NM_001286573.1 67.2% 73.7% (many diffs)
16 mouse 110147 Ehmt2 euchromatic histone lysine ... XM_011246249.1 66.6% 73.1% (many diffs)
17 mouse 110147 Ehmt2 euchromatic histone lysine ... XR_001782028.1 63% (many diffs)
18 mouse 110147 Ehmt2 euchromatic histone lysine ... XR_876459.1 62.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3069
ORF length:
3003
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG TGATGATGTC CACTCACTGG GAAAGGTGAC CTCAGATCTG GCCAAAAGGA
121GGAAGCTGAA CTCAGGAGGT GGCCTGTCGG AGGAGTTAGG TTCTGCCCGG CGTTCAGGAG
181AAGTGACCCT GACGAAAGGG GACCCCGGGT CCCTGGAGGA GTGGGAGACG GTGGTGGGTG
241ATGACTTCAG TCTCTACTAT GATTCCTACT CTGTGGATGA GCGCGTGGAC TCCGACAGCA
301AGTCTGAAGT TGAAGCTCTA ACTGAACAAC TAAGTGAAGA GGAGGAGGAG GAAGAGGAGG
361AAGAAGAAGA AGAGGAAGAG GAGGAGGAAG AGGAAGAAGA AGAGGAAGAT GAGGAGTCAG
421GGAATCAGTC AGATAGGAGT GGTTCCAGTG GCCGGCGCAA GGCCAAGAAG AAATGGCGAA
481AAGACAGCCC ATGGGTGAAG CCGTCTCGGA AACGGCGCAA GCGGGAGCCT CCGCGGGCCA
541AGGAGCCACG AGGAGTGAAT GGTGTGGGCT CCTCAGGCCC CAGTGAGTAC ATGGAGGTCC
601CTCTGGGGTC CCTGGAGCTG CCCAGCGAGG GGACCCTCTC CCCCAACCAC GCTGGGGTGT
661CCAATGACAC ATCTTCGCTG GAGACAGAGC GAGGGTTTGA GGAGTTGCCC CTGTGCAGCT
721GCCGCATGGA GGCACCCAAG ATTGACCGCA TCAGCGAGAG GGCGGGGCAC AAGTGCATGG
781CCACTGAGAG TGTGGACGGA GAGCTGTCAG GCTGCAATGC CGCCATCCTC AAGCGGGAGA
841CCATGAGGCC ATCCAGCCGT GTGGCCCTGA TGGTGCTCTG TGAGACCCAC CGCGCCCGCA
901TGGTCAAACA CCACTGCTGC CCGGGCTGCG GCTACTTCTG CACGGCGGGC ACCTTCCTGG
961AGTGCCACCC TGACTTCCGT GTGGCCCACC GCTTCCACAA GGCCTGTGTG TCTCAGCTGA
1021ATGGGATGGT CTTCTGTCCC CACTGTGGGG AGGATGCTTC TGAAGCTCAA GAGGTGACCA
1081TCCCCCGGGG TGACGGGGTG ACCCCACCGG CCGGCACTGC AGCTCCTGCA CCCCCACCCC
1141TGTCCCAGGA TGTCCCCGGG AGAGCAGACA CTTCTCAGCC CAGTGCCCGG ATGCGAGGGC
1201ATGGGGAACC CCGGCGCCCG CCCTGCGATC CCCTGGCTGA CACCATTGAC AGCTCAGGGC
1261CCTCCCTGAC CCTGCCCAAT GGGGGCTGCC TTTCAGCCGT GGGGCTGCCA CTGGGGCCAG
1321GCCGGGAGGC CCTGGAAAAG GCCCTGGTCA TCCAGGAGTC AGAGAGGCGG AAGAAGCTCC
1381GTTTCCACCC TCGGCAGTTG TACCTGTCCG TGAAGCAGGG CGAGCTGCAG AAGGTGATCC
1441TGATGCTGTT GGACAACCTG GACCCCAACT TCCAGAGCGA CCAGCAGAGC AAGCGCACGC
1501CCCTGCATGC AGCCGCCCAG AAGGGCTCCG TGGAGATCTG CCATGTGCTG CTGCAGGCTG
1561GAGCCAACAT AAATGCAGTG GACAAACAGC AGCGGACGCC ACTGATGGAG GCCGTGGTGA
1621ACAACCACCT GGAGGTAGCC CGTTACATGG TGCAGCGTGG TGGCTGTGTC TATAGCAAGG
1681AGGAGGACGG TTCCACCTGC CTCCACCACG CAGCCAAAAT CGGGAACTTG GAGATGGTCA
1741GCCTGCTGCT GAGCACAGGA CAGGTGGACG TCAACGCCCA GGACAGTGGG GGGTGGACGC
1801CCATCATCTG GGCTGCAGAG CACAAGCACA TCGAGGTGAT CCGCATGCTA CTGACGCGGG
1861GCGCCGACGT CACCCTCACT GACAACGAGG AGAACATCTG CCTGCACTGG GCCTCCTTCA
1921CGGGCAGCGC CGCCATCGCC GAAGTCCTTC TGAATGCGCG CTGTGACCTC CATGCTGTCA
1981ACTACCATGG GGACACCCCC CTGCACATCG CAGCTCGGGA GAGCTACCAT GACTGCGTGC
2041TGTTATTCCT GTCACGTGGG GCCAACCCTG AGCTGCGGAA CAAAGAGGGG GACACAGCAT
2101GGGACCTGAC TCCCGAGCGC TCCGACGTGT GGTTTGCGCT TCAACTCAAC CGCAAGCTCC
2161GACTTGGGGT GGGAAATCGG GCCATCCGCA CAGAGAAGAT CATCTGCCGG GACGTGGCTC
2221GGGGCTATGA GAACGTGCCC ATTCCCTGTG TCAACGGTGT GGATGGGGAG CCCTGCCCTG
2281AGGATTACAA GTACATCTCA GAGAACTGCG AGACGTCCAC CATGAACATC GATCGCAACA
2341TCACCCACCT GCAGCACTGC ACGTGTGTGG ACGACTGCTC TAGCTCCAAC TGCCTGTGCG
2401GCCAGCTCAG CATCCGGTGC TGGTATGACA AGGATGGGCG ATTGCTCCAG GAATTTAACA
2461AGATTGAGCC TCCGCTGATT TTCGAGTGTA ACCAGGCGTG CTCATGCTGG AGAAACTGCA
2521AGAACCGGGT CGTACAGAGT GGCATCAAGG TGCGGCTACA GCTCTACCGA ACAGCCAAGA
2581TGGGCTGGGG GGTCCGCGCC CTGCAGACCA TCCCACAGGG GACCTTCATC TGCGAGTATG
2641TCGGGGAGCT GATCTCTGAT GCTGAGGCTG ATGTGAGAGA GGATGATTCT TACCTCTTCG
2701ACTTAGACAA CAAGGATGGA GAGGTGTACT GCATAGATGC CCGTTACTAT GGCAACATCA
2761GCCGCTTCAT CAACCACCTG TGTGACCCCA ACATCATTCC CGTCCGGGTC TTCATGCTGC
2821ACCAAGACCT GCGATTTCCA CGCATCGCCT TCTTCAGTTC CCGAGACATC CGGACTGGGG
2881AGGAGCTAGG GTTTGACTAT GGCGACCGCT TCTGGGACAT CAAAAGCAAA TATTTCACCT
2941GCCAATGTGG CTCTGAGAAG TGCAAGCACT CAGCCGAAGC CATTGCCCTG GAGCAGAGCC
3001GTCTGGCCCG CCTGGACCCA CACCCTGAGC TGCTGCCCGA GCTCGGCTCC CTGCCCCCTG
3061TCAACACATG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
3121tttgttgcaa cgaac

Download FASTA (ORF) (Full)