Construct: ORF ccsbBroadEn_11621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006563.1_s300c1, BRDN0000386332
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMC6 (11322)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11322 TMC6 transmembrane channel like 6 XM_011524257.3 82.9% 82.9% 1_273del
2 human 11322 TMC6 transmembrane channel like 6 XM_024450557.1 76.8% 76.8% 1_402del
3 human 11322 TMC6 transmembrane channel like 6 XM_011524256.1 58.1% 58.1% 1_957del
4 human 11322 TMC6 transmembrane channel like 6 NM_001127198.2 55.1% 55.1% 1_1083del
5 human 11322 TMC6 transmembrane channel like 6 NM_001321185.1 55.1% 55.1% 1_1083del
6 human 11322 TMC6 transmembrane channel like 6 NM_007267.7 55.1% 55.1% 1_1083del
7 human 11322 TMC6 transmembrane channel like 6 XM_005256995.1 55.1% 55.1% 1_1083del
8 human 11322 TMC6 transmembrane channel like 6 XM_011524255.1 55.1% 55.1% 1_1083del
9 human 11322 TMC6 transmembrane channel like 6 XM_024450555.1 55.1% 55.1% 1_1083del
10 human 11322 TMC6 transmembrane channel like 6 XM_024450556.1 55.1% 55.1% 1_1083del
11 human 11322 TMC6 transmembrane channel like 6 XM_017024107.1 47.7% 47.7% 1_1083del;1533_1534ins180
12 human 11322 TMC6 transmembrane channel like 6 XM_017024108.1 47.7% 47.7% 1_1083del;1533_1534ins180
13 human 11322 TMC6 transmembrane channel like 6 XR_243632.1 42.2% 1_1271del;2075_2076ins134;2470_2702del
14 human 11322 TMC6 transmembrane channel like 6 XR_001752420.1 21.1% 1_1271del;2604_6300del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1398
ORF length:
1332
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TCACTCTTTC GGGGAGAGCT ACCGGGTGGG CAGCACCTCT GGCATCCACG
121CCATCACCGT CTTCTGCTCC TGGGACTACA AGGTGACGCA GAAGCGGGCC TCCCGCCTCC
181AGCAGGACAA TATTCGCACC CGGCTGAAGG AGCTGCTGGC CGAGTGGCAG CTGCGGCACA
241GCCCCAGGAG CGTGTGCGGG AGGCTGCGGC AGGCGGCTGT GCTGGGGCTT GTGTGGCTGC
301TGTGTCTGGG GACCGCGCTG GGCTGCGCCG TGGCCGTCCA CGTCTTCTCG GAGTTCATGA
361TCCAGAGTCC AGAGGCTGCT GGCCAGGAGG CTGTGCTGCT GGTCCTGCCC CTGGTGGTTG
421GCCTCCTCAA CCTGGGGGCC CCCTACCTGT GCCGTGTCCT GGCCGCCCTG GAGCCGCATG
481ACTCCCCGGT ACTGGAGGTG TACGTGGCCA TCTGCAGGAA CCTCATCCTC AAGCTGGCCA
541TCCTGGGGAC ACTGTGCTAC CACTGGCTGG GCCGCAGGGT GGGCGTCCTG CAGGGCCAGT
601GCTGGGAGGA TTTTGTGGGC CAGGAGCTGT ACCGGTTCCT GGTGATGGAC TTCGTCCTCA
661TGTTGCTGGA CACGCTTTTT GGGGAACTGG TGTGGAGGAT TATCTCCGAG AAGAAGCTGA
721AGAGGAGGCG GAAGCCGGAG TTTGACATTG CCCGGAATGT CCTGGAGCTG ATTTATGGGC
781AGACTCTGAC CTGGCTGGGG GTGCTCTTCT CGCCCCTCCT CCCCGCCGTG CAGATCATCA
841AGCTGCTGCT CGTCTTCTAT GTCAAGAAGA CCAGCCTTCT GGCCAACTGC CAGGCGCCGC
901GCCGGCCCTG GCTGGCCTCA CACATGAGCA CCGTCTTCCT CACGCTGCTC TGCTTCCCCG
961CCTTCCTGGG CGCCGCTGTC TTCCTCTGCT ACGCCGTCTG GCAGGTGAAG CCCTCGAGCA
1021CCTGCGGCCC CTTCCGGACC CTGGACACCA TGTACGAGGC CGGCAGGGTG TGGGTGCGCC
1081ACCTGGAGGC GGCAGGCCCC AGGGTCTCCT GGCTGCCCTG GGTGCACCGG TACCTGATGG
1141AAAACACCTT CTTTGTCTTC CTGGTGTCAG CCCTGCTGCT GGCCGTGATC TACCTCAACA
1201TCCAGGTGGT GCGGGGCCAG CGCAAGGTCA TCTGCCTGCT CAAGGAGCAG ATCAGCAATG
1261AGGGTGAGGA CAAAATCTTC TTAATCAACA AGCTTCACTC CATCTACGAG AGGAAGGAGA
1321GGGAGGAGAG GAGCAGGGTT GGGACAACCG AGGAGGCTGC GGCACCCCCT GCCCTGCTCA
1381CAGATGAACA GGATGCCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1441gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)