Construct: ORF ccsbBroadEn_11631

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016310.1_s300c1, BRDN0000390683
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CEP162 (22832)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22832 CEP162 centrosomal protein 162 XM_011535594.2 69.4% 68.9% 1_228del;1797_1798insGTAG;1818_2283del
2 human 22832 CEP162 centrosomal protein 162 XR_002956270.1 50.9% 1_597del;2166_2167insGTAG;2187_3112del
3 human 22832 CEP162 centrosomal protein 162 NM_001286206.2 39.8% 39.5% 1569_1570insGTAG;1590_3981del
4 human 22832 CEP162 centrosomal protein 162 XM_006715380.3 39.8% 39.5% 1569_1570insGTAG;1590_3981del
5 human 22832 CEP162 centrosomal protein 162 XM_017010484.2 39.8% 39.5% 1569_1570insGTAG;1590_3981del
6 human 22832 CEP162 centrosomal protein 162 XM_005248674.4 38.7% 38.4% 1_114del;1683_1684insGTAG;1704_4095del
7 human 22832 CEP162 centrosomal protein 162 XM_017010483.2 38.7% 38.4% 1_114del;1683_1684insGTAG;1704_4095del
8 human 22832 CEP162 centrosomal protein 162 NM_014895.4 37.7% 37.4% 1_228del;1797_1798insGTAG;1818_4209del
9 human 22832 CEP162 centrosomal protein 162 XR_001743263.2 34.1% 1_597del;2166_2167insGTAG;2187_4644del
10 human 22832 CEP162 centrosomal protein 162 XR_001743264.2 34% 1_597del;2166_2167insGTAG;2187_4657del
11 human 22832 CEP162 centrosomal protein 162 XR_001743262.2 33.3% 1_597del;2166_2167insGTAG;2187_4763del
12 human 22832 CEP162 centrosomal protein 162 XR_942351.3 31.7% 1_597del;2166_2167insGTAG;2187_5000del
13 human 22832 CEP162 centrosomal protein 162 XM_011535592.3 16.3% 15.9% 0_1ins939;630_631insGTAG;651_3042del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1659
ORF length:
1593
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AATAGAAGAG GAGTCTGCTG AAAAGATTCA ATTTCTTAAG AGCAGTGGAA
121CCTCTCTCTT AAGTACTGAT AGCTTAGAAA CAAATGAACT AGTAGTTTCT GAGCTCAACC
181ATAGTAGTCT CGGAGTGGGA TTGGACACAT TAGAAGAACA AGAGGAGAAA GAACAATTTT
241TTGCCAGGCT TGAGAAAGGC TTGACATCTT CCATTGATTA TTCGAGATTA AATAAGGAAT
301TGGATTCTAA TGACTCTACA CATTTTAAAG CTTTACATAG TAATCAAGCC AACGCAGAAC
361TAACTGATGA CGAACATGAG AATGAATCGA AACATGAAGA ACTGGCAGAA AATTACAGTG
421ATGATTTTGA AGATGAGTAT GTTGGTGCAC CGTTGACTAC TAAAGATGAA GAGATGCCTT
481CCAAAGAGAA TTCCAAATCA GAAAAAATAA GTGTGCCCAA ACAGGAAGAA GAAAAAACTG
541GCATGCTTGC TAATGTTGTG CTGCTTGATT CATTAGACTC TGTTGCAGAG GTCAATCTTG
601ATGAACAAGA TAAAATAACA CCTAAGCCAA GGTGCCTACC AGAAATGACT GAGAATGAAA
661TGACAGGAAC AGGTGTTTCT TATGGACAAA GCAGTAGTGA CGTTGAAGCC CTACATCAAG
721CTTATTGTCA TATAGCCCAT TCATTGGGAG ATGAAGACAA ACAAAAAATT GAGAGTAACA
781CAGTGGAAGA TATCAAGAGC TCAGTGAAAG GTCATCCTCA AGAAAATGAA GAGAATTCAA
841AAAACATCTC TACTATGGAA TCTGATCTGC CCACAGTAGA GGAGCTGATG AAACCTATCA
901GAATAGATTC CTTTGGGATC AGTGGTTTTG ATTTACAACC TGTCAGCTCT GAGAAAGTGG
961CCGAAAGAAA AGAAACTGAA TTTTTTAGCT CTTTACCCCT GAAGATGAAC CCAAATATTT
1021TGTCTCAAGA CTCACAACAT GTGAACCTTT TTTTTGACAA AAATGATGAG AATGTGATTT
1081TACAAAAGAC CACAAATGAG AGTATGGAAA ACAGCTGTCC ACAAGTAACT GAAGTAACTG
1141CCACAGAAGA ACATGTTGAT AAAATGTACC TTAATATTTT GAGGAAAAAA ATAACTGTTA
1201ATTCTTCATC ATTATCTCAG GATGACAAAA TTAATAAAAC TTACAGATCT CAACTTAGTT
1261CTGAAGAAGA AGGGGCTGTA ATGGGTAAAC AGGTACCATA CAAGAAGGCC AGAAGTGCAC
1321CTCCTTTACT TAAAAGGAAA CCCCAGAGTG GATTATATGC GTCAGTTAGG AGCTCAGGCT
1381ATGGCAAACC CAGTTCACCA CTCAAGATGT TTTCTACTCT TGAAAAGAAA ACTTCAGAGG
1441ACATTATAAA AAGCAAAAAC TTGAGATCGA TTTCTACCTC CAATCAACCT AGGAAAAAAG
1501AAATCTTATC TGGAACAAAA CTCATCAAGC CTGCAGCTTT GGATAAACCA GCTCACAAAA
1561CTGAAAGTTG CCTGTCTACT CGTAAGAAGT CTGAAAATCC CACAGAAACT GATTCCTGTA
1621TTCAGTTTCA GACTGTAGGA TTCCTTAGGA TACTGTGGTG CCCAACTTTC TTGTACAAAG
1681Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)