Transcript: Human XM_006715380.3

PREDICTED: Homo sapiens centrosomal protein 162 (CEP162), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CEP162 (22832)
Length:
5234
CDS:
438..4421

Additional Resources:

NCBI RefSeq record:
XM_006715380.3
NBCI Gene record:
CEP162 (22832)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000264152 AGCCGAAATAGACGTTCTTAA pLKO_005 3347 CDS 100% 13.200 18.480 N CEP162 n/a
2 TRCN0000264150 TCGGCAGAAGATACGCTTAAA pLKO_005 2924 CDS 100% 13.200 18.480 N CEP162 n/a
3 TRCN0000264148 TGAACATACTCCGCCACATTT pLKO_005 4710 3UTR 100% 13.200 18.480 N CEP162 n/a
4 TRCN0000264149 AGCAACTCAAGAGGTACTTAT pLKO_005 3968 CDS 100% 13.200 9.240 N CEP162 n/a
5 TRCN0000264151 CCATTGATTATTCGAGATTAA pLKO_005 643 CDS 100% 13.200 9.240 N CEP162 n/a
6 TRCN0000266901 TGGAACAAATGTGAGCTATTT pLKO_005 389 5UTR 100% 13.200 9.240 N Cep162 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11631 pDONR223 100% 39.8% 39.5% None 1569_1570insGTAG;1590_3981del n/a
2 ccsbBroad304_11631 pLX_304 0% 39.8% 39.5% V5 1569_1570insGTAG;1590_3981del n/a
3 TRCN0000470069 AAAATGCGTTGGCGATTGACGTTT pLX_317 24.4% 39.8% 39.5% V5 1569_1570insGTAG;1590_3981del n/a
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