Construct: ORF ccsbBroadEn_11638
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006993.1_s300c1, BRDN0000385660
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- MLXIP (22877)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22877 | MLXIP | MLX interacting protein | XM_006719294.4 | 33.6% | 29.5% | (many diffs) |
| 2 | human | 22877 | MLXIP | MLX interacting protein | XM_006719293.3 | 28.8% | 23.7% | (many diffs) |
| 3 | human | 22877 | MLXIP | MLX interacting protein | NM_014938.6 | 20.9% | 18.4% | (many diffs) |
| 4 | human | 22877 | MLXIP | MLX interacting protein | XM_006719292.4 | 20.9% | 18.3% | (many diffs) |
| 5 | human | 22877 | MLXIP | MLX interacting protein | XM_006719291.4 | 20% | 17.6% | (many diffs) |
| 6 | human | 22877 | MLXIP | MLX interacting protein | XM_006719290.4 | 20% | 17.6% | (many diffs) |
| 7 | human | 22877 | MLXIP | MLX interacting protein | XR_001748624.2 | 7.4% | (many diffs) | |
| 8 | human | 22877 | MLXIP | MLX interacting protein | XR_944509.3 | 7.3% | (many diffs) | |
| 9 | human | 22877 | MLXIP | MLX interacting protein | XR_944508.3 | 7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 717
- ORF length:
- 651
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 tTCACATGGA TGGGCAGGGC TGTGAACACA CCTCCCGGAC TGAGGACCCG TTTATCCAGC 121 CCACGGACTT CGGTCCCTCA GAGCCGCCAC TGAGTGTCCC GCCGCCCATC TCCCCCGTGT 181 TACCATTAGT TCCTCCTCCT GCCACTGCCC TGAACCCCCC GGCTCCACCC ACCTTCCATC 241 AGCCACAGAA GTTTGCTGGA GTCAACAAAG CGCCGTCTGT CATCACCCAC ACGGCCTCTG 301 CCACCCTCAC CCACGATGCC CCCGCCACCA CCTTTAGCCA GAGTCAGGGC CTTGTGATCA 361 CCACCCATCA CCCTGCCCCG TCAGCGGCCC CTTGTGGGCT GGCACTGTCT CCTGTCACCC 421 GGCCTCCCCA GCCACGGTTA ACTTTTGTGC ACCCCAAACC TGTATCCTTG ACTGGGGGCA 481 GGCCTAAGCA GCCCCACAAA ATAGTGCCTG CTCCCAAACC AGAGCCCGTG TCCTTGGTGT 541 TGAAGAATGC CCGTATCGCC CCAGGTGAGC CAGGCGGGGA GACTCAGTGC GGGGCTCCCC 601 CCGACCCAGA GGGATGTTTT CCCATCCCAA AGGCTTTCAA ACTTGTGACC ACCACCACCA 661 CCCTGGTGTG CACGTGCATG CGCACACACA TACACTTAAA TGAAACAAAA GTGTCATGAN 721 caactttctt gtacaaagtt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 781 aac