Construct: ORF ccsbBroadEn_11654

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001231.1_s300c1, BRDN0000395480
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCAP (22937)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22937 SCAP SREBF chaperone XM_011533502.3 97.9% 96.2% (many diffs)
2 human 22937 SCAP SREBF chaperone XM_017005921.1 97.6% 96.7% (many diffs)
3 human 22937 SCAP SREBF chaperone XM_005264971.1 97.5% 96.6% (many diffs)
4 human 22937 SCAP SREBF chaperone NM_001320044.2 87.6% 85.7% (many diffs)
5 human 22937 SCAP SREBF chaperone XM_005264968.1 87.5% 85.6% (many diffs)
6 human 22937 SCAP SREBF chaperone XM_005264967.2 70.1% 68.7% (many diffs)
7 human 22937 SCAP SREBF chaperone NM_012235.4 70.1% 68.6% (many diffs)
8 human 22937 SCAP SREBF chaperone XM_011533501.1 70.1% 68.6% (many diffs)
9 human 22937 SCAP SREBF chaperone XM_017005918.1 70.1% 68.6% (many diffs)
10 mouse 235623 Scap SREBF chaperone NM_001001144.3 61.2% 62.2% (many diffs)
11 mouse 235623 Scap SREBF chaperone NM_001103162.2 61.2% 62.2% (many diffs)
12 mouse 235623 Scap SREBF chaperone XM_006512083.2 61.2% 62.2% (many diffs)
13 mouse 235623 Scap SREBF chaperone XM_006512084.3 61.2% 62.2% (many diffs)
14 mouse 235623 Scap SREBF chaperone XM_006512085.3 61.2% 62.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2781
ORF length:
2715
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CCTGACTGAA AGGCTGCGTG AGAAGATATC TCGGGCCTTC TACAACCATG
121GGCTCCTCTG TGCATCCTAT CCCATCCCCA TCATCCTCAT CGGCTACTTC ACCCTAGTGC
181CCGCCATCCA GGAGTTCTGT CTCTTTGCTG TCGTGGGGCT GGTGTCTGAC TTCTTCCTTC
241AGATGCTGTT TTTCACCACT GTCCTGTCCA TTGACATTCG CCGGATGGAG CTAGCAGACC
301TGAACAAGCG ACTGCCCCCT GAGGCCTGCC TGCCCTCAGC CAAGCCAGTG GGGCAGCCAA
361CGCGCTACGA GCGGCAGCTG GCTGTGAGGC CGTCCACACC CCACACCATC ACGTTGCAGC
421CGTCTTCCTT CCGAAACCTG CGGCTCCCCA AGAGGCTGCG TGTTGTCTAC TTCCTGGCCC
481GCACCCGCCT GGCACAGCGC CTCATCATGG CTGGCACCGT TGTCTGGATT GGCATCCTGG
541TATACACAGA CCCAGCAGGG CTGCGCAACT ACCTCGCTGC CCAGGTGACG GAACAGAGCC
601CATTGGGTGA GGGAGCCCTG GCTCCCATGC CCGTGCCTAG TGGCATGCTG CCCCCCAGCC
661ACCCGGACCC TGCCTTCTCC ATCTTCCCAC CTGATGCCCC TAAGCTACCT GAGAACCAGA
721CGTCGCCAGG CGAGTCACCT GAGCGTGGAG GTCCAGCAGA GGTTGTCCAT GACAGCCCAG
781TCCCAGAGGT AACCTGGGGG CCTGAGGATG AGGAACTTTG GAGGAAATTG TCCTTCCGCC
841ACTGGCCGAC GCTCTTCAGC TATTACAACA TCACACTGGC CAAGAGGTAC ATCAGCCTGC
901TGCCCGTCAT CCCAGTCACG CTCCGCCTGA ACCCGAGGGA GGCTCTGGAG GGCCGGCACC
961CTCAGGACGG CCGCAGTGCC TGGCCCCCAC CGGGGCCCAT ACCTGCTGGG CACTGGGAAG
1021CAGGACCCAA GGGCCCAGGT GGGGTGCAGG CCCATGGAGA CGTCACGCTG TACAAGGTGG
1081CGGCGCTGGG CCTGGCCACC GGCATCGTCT TGGTGCTGCT GCTGCTCTGC CTCTACCGCG
1141TGCTATGCCC GCGCAACTAC GGGCAGCTGG GTGGTGGGCC CGGGCGGCGG AGGCGCGGGG
1201AGCTGCCCTG CGACGACTAC GGCTATGCGC CACCCGAGAC GGAGATCGTG CCGCTTGTGC
1261TGCGCGGCCA CCTCATGGAC ATCGAGTGCC TGGCCAGCGA CGGCATGCTG CTGGTGAGCT
1321GCTGCCTGGC AGGCCACATC TGCGTGTGGG ACGCGCAGAC CGGGGATTGC CTAACGCGCA
1381TTCCGCGCCC AGGGCAGCGC CGGGACAGTG GCGTGGGCAG CGGGCTTGAG GCTCAGGAGA
1441GCTGGGAACG ACTTTCAGAT GGTGGGAAGG CTGGTCCAGA GGAGCCTGGG GACAGCCCTC
1501CCCTGAGACA CCGCCCCCGG GGCCCTCCGC CGCCTTCCCT CTTCGGGGAC CAGCCTGACC
1561TCACCTGCTT AATTGACACC AACTTTTCAG CGCAGCCTCG GTCCTCACAG CCCACTCAGC
1621CCGAGCCCCG GCACCGGGCG GTCTGTGGCC GCTCTCGGGA CTCCCCAGGC TATGACTTCA
1681GCTGCCTGGT GCAGCGGGTG TACCAGGAGG AGGGGCTGGC GGCCGTCTGC ACACCAGCCC
1741TGCGCCCACC CTCGCCTGGG CCGGTGCTGT CCCAGGCCCC TGAGGACGAG GGTGGCTCCC
1801CCGAGAAAGG CTCCCCTTCC CTCGCCTGGG CCCCCAGTGC CGAGGGTTCC ATCTGGAGCT
1861TGGAGCTGCA GGGCAACCTC ATCGTGGTGG GGCGGAGCAG CGGCCGGCTG GAGGTGTGGG
1921ACGCCATTGA AGGGGTGCTG TGCTGCAGCA GCGAGGAGGT CTCCTCAGGC ATTACCGCTC
1981TGGTGTTCTT GGACAAAAGG ATTGTGGCTG CACGGCTCAA CGGTTCCCTT GATTTCTTCT
2041CCTTGGAGAC CCACACTGCC CTCAGCCCCC TGCAGTTTAG AGGGACCCCA GGGCGGGGCA
2101GTTCCCCTGC CTCTCCAGTG TACAGCAGCA GCGACACAGT GGCCTGTCAC CTGACCCACA
2161CAGTGCCCTG TGCACACCAA AAACCCATCA CAGCCCTGAA AGCCGCTGCT GGGCGCTTGG
2221TGACTGGGAG CCAAGACCAC ACACTGAGAG TGTTCCGTCT GGAGGACTCG TGCTGCCTCT
2281TCACCCTTCA GGGCCACTCA GGGGCCATCA CGACCGTGTA CATTGACCAG ACCATGGTGC
2341TGGCCAGTGG AGGACAAGAT GGGGCCATCT GCCTGTGGGA TGTACTGACT GGCAGCCGGG
2401TCAGCCATGT GTTTGCTCAC CGTGGGGATG TCACCTCCCT TACCTGTACC ACCTCCTGTG
2461TCATCAGCAG TGGCCTGGAT GACCTCATCA GCATCTGGGA CCGCAGCACA GGCATCAAGT
2521TCTACTCCAT TCAGCAGGAC CTGGGCTGTG GTGCAAGCTT GGGTGTCATC TCAGACAACC
2581TGCTGGTGAC TGGCGGCCAG GGCTGTGTCT CCTTTTGGGA CCTAAACTAC GGGGACCTGT
2641TACAGACAGT CTACCTGGGG AAGAACAGTG AGGCCCAGCC TGCCCGCCAG ATCCTGGTGC
2701TGGACAACGC TGCCATTGTC TGCAACTTTG GCAGTGAGCT CAGCCTGGTG TATGTGCCCT
2761CTGTGCTGGA GAAGCTGGAC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2821attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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