Construct: ORF ccsbBroadEn_11658

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011433.1_s300c1, BRDN0000397029
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDFY3 (23001)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23001 WDFY3 WD repeat and FYVE domain c... XM_017007909.1 14.6% 14.6% 1_7338del
2 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531765.3 11.9% 11.9% 1_9267del
3 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531764.3 11.9% 11.9% 1_9288del
4 human 23001 WDFY3 WD repeat and FYVE domain c... NM_014991.5 11.9% 11.9% 1_9318del
5 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531763.3 11.9% 11.9% 1_9318del
6 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531762.3 11.9% 11.9% 1_9321del
7 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531761.3 11.9% 11.9% 1_9327del
8 human 23001 WDFY3 WD repeat and FYVE domain c... XM_005262858.5 11.8% 11.8% 1_9372del
9 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531757.3 11.8% 11.8% 1_9372del
10 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531759.2 11.8% 11.8% 1_9372del
11 human 23001 WDFY3 WD repeat and FYVE domain c... XM_011531760.3 11.8% 11.8% 1_9372del
12 human 23001 WDFY3 WD repeat and FYVE domain c... XM_017007906.2 11.8% 11.8% 1_9372del
13 human 23001 WDFY3 WD repeat and FYVE domain c... XM_017007907.2 11.8% 11.8% 1_9372del
14 human 23001 WDFY3 WD repeat and FYVE domain c... XM_017007908.2 11.8% 11.8% 1_9372del
15 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535227.3 10.4% 11.4% (many diffs)
16 mouse 72145 Wdfy3 WD repeat and FYVE domain c... NM_172882.3 10.4% 11.3% (many diffs)
17 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535226.3 10.4% 11.3% (many diffs)
18 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535225.3 10.4% 11.3% (many diffs)
19 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535224.3 10.4% 11.3% (many diffs)
20 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535220.3 10.4% 11.3% (many diffs)
21 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535221.2 10.4% 11.3% (many diffs)
22 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535222.3 10.4% 11.3% (many diffs)
23 mouse 72145 Wdfy3 WD repeat and FYVE domain c... XM_006535223.3 10.4% 11.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1326
ORF length:
1260
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CACCTCCAAA GAAAAGGCCA AGACCGTCAC CCTCAAACAG GCCTTACTGG
121GCCACACTGA TACCGTCACC TGCGCCACAG CATCATTAGC CTATCACATA ATTGTCAGTG
181GGTCCCGTGA TCGAACCTGT ATCATTTGGG ATTTGAACAA ACTGTCATTT CTAACCCAGC
241TTCGAGGGCA TCGAGCTCCA GTTTCTGCTC TTTGTATCAA TGAATTAACA GGGGACATTG
301TGTCCTGCGC TGGCACATAT ATCCATGTGT GGAGCATCAA TGGGAACCCT ATCGTGAGTG
361TCAACACGTT CACAGGTAGG AGCCAGCAGA TCATCTGCTG CTGCATGTCG GAGATGAACG
421AATGGGACAC GCAGAACGTC ATAGTGACAG GACACTCAGA TGGAGTGGTT CGGTTTTGGA
481GAATGGAATT TTTGCAAGTT CCTGAAACAC CAGCTCCTGA GCCTGCTGAA GTCCTAGAAA
541TGCAGGAAGA CTGTCCAGAA GCACAAATAG GGCAGGAAGC CCAAGACGAG GACAGCAGTG
601ATTCAGAAGC AGATGAGCAG AGCATCAGCC AGGACCCTAA GGACACTCCA AGCCAACCCA
661GCAGCACCAG CCACAGGCCC CGGGCAGCCT CCTGCCGCGC AACAGCCGCC TGGTGTACTG
721ACAGTGGCTC TGACGACTCC AGACGCTGGT CCGACCAGCT CAGTCTAGAT GAGAAAGACG
781GCTTCATATT TGTGAACTAT TCAGAGGGCC AGACCAGAGC CCATCTGCAG GGCCCCCTTA
841GCCACCCCCA CCCCAATCCC ATTGAGGTGC GGAATTACAG CAGATTGAAA CCTGGGTACC
901GATGGGAACG GCAGCTGGTG TTCAGGAGTA AGCTGACTAT GCACACAGCC TTTGATCGAA
961AGGACAATGC ACACCCAGCT GAGGTCACTG CCTTGGGCAT CTCCAAGGAT CACAGTAGGA
1021TCCTCGTTGG TGACAGTCGA GGCCGAGTTT TCAGCTGGTC TGTGAGTGAC CAGCCAGGCC
1081GTTCTGCTGC TGATCACTGG GTGAAGGATG AAGGTGGTGA CAGCTGCTCA GGCTGCTCGG
1141TGAGGTTTTC ACTCACAGAA AGACGACACC ATTGCAGGAA CTGTGGTCAG CTCTTCTGCC
1201AGAAGTGCAG TCGCTTTCAA TCTGAAATCA AACGCTTGAA AATCTCATCC CCGGTGCGTG
1261TTTGTCAGAA CTGTTATTAT AACTTACAGC ATGAGAGAGG TTCAGAAGAT GGGCCTCGAA
1321ATTGTTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1381gttgcaacga ac

Download FASTA (ORF) (Full)