Construct: ORF ccsbBroadEn_11684

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014818.1_s300c1, BRDN0000387575
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPB41L3 (23136)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281534.2 99.9% 100% 1605T>C
2 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025640.2 99.5% 99.5% 1605T>C;1805_1816del
3 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025637.2 98.5% 98.6% 1605T>C;1613_1648del
4 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525634.3 98.1% 98.1% 1605T>C;1613_1648del;1841_1852del
5 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525637.3 97.9% 97.9% 1558_1559ins54
6 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025644.2 97.8% 97.9% 1337_1338ins54;1551T>C
7 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025620.2 97.1% 97.1% 1605T>C;1805_1879del
8 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025646.2 96.8% 96.8% 1605T>C;2406_2407ins81
9 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025635.2 96.3% 96.4% 1605T>C;1805_1816del;2418_2419ins81
10 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025638.2 95.9% 95.8% 1605T>C;2488_2489insCGCTGGCTCAGGC;2490_2491ins92
11 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525632.3 95.8% 95.8% 1605T>C;1613_1648del;1841_1915del
12 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025643.2 95.5% 95.5% 1605T>C;1613_1648del;2442_2443ins81
13 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025628.2 95.4% 95.4% 1605T>C;1805_1927del
14 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025641.2 94.7% 94.7% 1558_1559ins54;2352_2353ins81
15 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025634.2 94.6% 94.5% (many diffs)
16 human 23136 EPB41L3 erythrocyte membrane protei... NM_001330557.1 94.1% 94.2% 1605T>C;1613_1648del;1841_1963del
17 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025625.2 94.1% 94.2% 1605T>C;1613_1648del;1841_1963del
18 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025621.2 93.4% 93.4% 1558_1559ins54;1751_1873del
19 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525626.3 92.8% 92.9% 1605T>C;1805_2002del
20 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025624.2 92.8% 92.9% (many diffs)
21 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025623.2 92.4% 92.4% 1605T>C;1805_1927del;2529_2530ins81
22 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025629.2 92.2% 92.2% (many diffs)
23 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025630.2 92.2% 92.2% (many diffs)
24 human 23136 EPB41L3 erythrocyte membrane protei... XM_011525623.3 91.6% 91.7% 1605T>C;1613_1648del;1841_2038del
25 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025626.2 91.5% 91.5% (many diffs)
26 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025632.2 91.2% 91.2% (many diffs)
27 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025633.2 91.2% 91.2% (many diffs)
28 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281533.1 90.3% 90.3% (many diffs)
29 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025636.2 90.3% 90.3% (many diffs)
30 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025618.2 89.9% 90% 1605T>C;1805_2002del;2604_2605ins81
31 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025622.2 89.7% 89.8% (many diffs)
32 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025631.2 89.6% 89.5% (many diffs)
33 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025639.2 89.2% 89.3% (many diffs)
34 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025619.2 89.1% 89% (many diffs)
35 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025627.2 88.8% 88.8% (many diffs)
36 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025642.2 88.4% 88.3% (many diffs)
37 human 23136 EPB41L3 erythrocyte membrane protei... NM_001281535.1 87.3% 87.3% 0_1ins327;1278T>C
38 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025659.2 87.3% 87.3% 0_1ins327;1278T>C
39 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025657.2 86.1% 86.2% 0_1ins327;1278T>C;1286_1321del
40 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025660.2 84.1% 84.1% (many diffs)
41 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025651.2 83.4% 83.4% 0_1ins327;1278T>C;1478_1600del
42 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025648.2 82.3% 82.3% (many diffs)
43 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025655.2 81.4% 81.4% (many diffs)
44 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025647.2 81.1% 81.2% 0_1ins327;1278T>C;1478_1675del
45 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025652.2 80.3% 80.3% (many diffs)
46 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025645.2 80.1% 80.1% (many diffs)
47 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025654.2 79.3% 79.4% (many diffs)
48 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025656.2 78.5% 78.4% (many diffs)
49 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025649.2 78.2% 78.2% (many diffs)
50 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025658.2 77.4% 77.4% (many diffs)
51 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025650.2 77.2% 77.3% (many diffs)
52 human 23136 EPB41L3 erythrocyte membrane protei... NM_012307.4 76.6% 76.6% (many diffs)
53 human 23136 EPB41L3 erythrocyte membrane protei... XM_017025653.2 75.3% 75.3% (many diffs)
54 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317238.1 82.6% 87.5% (many diffs)
55 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249488.1 81.5% 86.4% (many diffs)
56 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246288.1 80.7% 85.7% (many diffs)
57 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249483.1 79% 83.6% (many diffs)
58 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249492.1 78.9% 83.5% (many diffs)
59 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355736.1 78% 82.6% (many diffs)
60 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_013813.2 78% 82.6% (many diffs)
61 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317234.1 77.1% 81.9% (many diffs)
62 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249494.1 77% 81.6% (many diffs)
63 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317231.1 76.9% 81.4% (many diffs)
64 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246290.1 76.8% 80.8% (many diffs)
65 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249480.1 76.2% 80.7% (many diffs)
66 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355733.1 76.2% 80.9% (many diffs)
67 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249485.1 76.2% 80.9% (many diffs)
68 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249486.1 75.9% 80.5% (many diffs)
69 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249489.1 75.4% 79.7% (many diffs)
70 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249487.1 74.4% 78.7% (many diffs)
71 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249481.1 74.2% 78.7% (many diffs)
72 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249491.1 74.1% 78.6% (many diffs)
73 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317232.1 73.4% 77.6% (many diffs)
74 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249490.1 72.6% 77% (many diffs)
75 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249484.1 71.6% 75.9% (many diffs)
76 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249495.1 71.1% 74.9% (many diffs)
77 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317239.2 69% 73.5% (many diffs)
78 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355732.1 67.2% 71.8% (many diffs)
79 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246283.1 66.8% 70.7% (many diffs)
80 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249476.1 66.4% 70.2% (many diffs)
81 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355734.1 65.7% 69.4% (many diffs)
82 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249475.1 64.9% 68.6% (many diffs)
83 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246279.1 64.4% 68.1% (many diffs)
84 mouse 13823 Epb41l3 erythrocyte membrane protei... NM_001355735.1 64.1% 68% (many diffs)
85 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249478.1 63.8% 67.4% (many diffs)
86 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246278.1 63% 66.6% (many diffs)
87 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249477.1 62.7% 66.2% (many diffs)
88 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246281.1 61.5% 64.9% (many diffs)
89 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_011246284.1 61.2% 64.8% (many diffs)
90 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249482.1 58% 61.8% (many diffs)
91 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523612.4 51.4% 53.9% (many diffs)
92 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523613.3 51.4% 53.9% (many diffs)
93 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523614.4 51.4% 53.9% (many diffs)
94 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523615.3 51.4% 53.9% (many diffs)
95 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523616.4 51.4% 53.9% (many diffs)
96 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523611.4 50.6% 53.1% (many diffs)
97 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_017317227.2 50.2% 52.8% (many diffs)
98 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249472.1 50.2% 52.8% (many diffs)
99 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249473.1 50.2% 52.8% (many diffs)
100 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_006523618.4 45.3% 47.8% (many diffs)
101 mouse 13823 Epb41l3 erythrocyte membrane protei... XM_030249474.1 44.1% 46.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2661
ORF length:
2595
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC GACCGAATCT GGATCAGACT CGGAATCCAA GCCGGACCAG GAGGCCGAGC
121CCCAGGAGGC GGCGGGGGCG CAGGGGCGCG CGGGGGCGCC CGTGCCGGAG CCGCCCAAGG
181AGGAGCAGCA GCAGGCCCTG GAGCAGTTCG CCGCCGCTGC AGCGCACAGC ACCCCGGTGC
241GGAGGGAGGT CACTGACAAG GAACAGGAGT TTGCTGCCAG GGCTGCAAAA CAGCTCGAAT
301ATCAGCAATT AGAAGACGAT AAACTTTCTC AGAAATCATC TAGCAGTAAA CTCTCTCGGT
361CTCCATTAAA GATTGTCAAA AAGCCTAAAA GCATGCAGTG CAAAGTGATA CTTCTCGATG
421GATCAGAATA TACCTGTGAT GTAGAGAAAC GCTCCAGAGG ACAAGTGCTG TTTGATAAAG
481TGTGTGAACA CTTGAACTTG CTAGAGAAAG ACTACTTTGG GCTTACGTAT CGAGATGCTG
541AAAACCAGAA GAATTGGTTG GACCCTGCTA AGGAAATAAA AAAACAGGTT CGAAGTGGTG
601CTTGGCACTT TTCATTTAAT GTGAAATTTT ATCCACCAGA CCCTGCCCAA CTATCTGAAG
661ATATCACCAG GTACTACCTC TGCTTGCAGT TGCGAGATGA CATCGTGTCC GGAAGGCTGC
721CCTGCTCCTT TGTTACCCTG GCCTTGCTGG GCTCCTACAC TGTCCAGTCA GAGCTCGGAG
781ACTATGACCC AGATGAATGT GGGAGCGATT ACATTAGTGA GTTCCGCTTT GCACCAAACC
841ACACTAAAGA ACTGGAAGAC AAAGTGATCG AGCTGCACAA GAGCCACAGA GGAATGACGC
901CAGCAGAAGC AGAGATGCAT TTCTTGGAAA ATGCCAAAAA ATTATCAATG TATGGGGTAG
961ATTTACATCA TGCTAAGGAC TCAGAAGGGG TAGAAATTAT GTTAGGAGTT TGTGCAAGTG
1021GTCTGTTGAT ATATCGCGAC CGGCTGCGAA TAAACAGATT TGCCTGGCCC AAGGTTCTAA
1081AGATTTCATA CAAACGGAAC AACTTTTACA TTAAGATCCG GCCGGGAGAG TTTGAACAAT
1141TTGAAAGCAC CATTGGGTTT AAGCTGCCAA ACCATCGAGC TGCCAAGCGT TTATGGAAAG
1201TATGTGTTGA GCATCATACA TTTTTCAGAC TACTGTTACC AGAAGCACCT CCCAAGAAAT
1261TCCTAACCTT GGGTTCCAAG TTTCGTTATA GTGGCAGGAC ACAAGCGCAA ACGAGAAGAG
1321CCAGTGCGTT GATAGATCGC CCAGCACCTT ACTTTGAACG CTCATCCAGC AAACGTTATA
1381CCATGTCTCG CAGCTTGGAT GGAGCATCAG TGAATGAAAA CCATGAAATA TACATGAAGG
1441ATTCTATGTC TGCTGCAGAG GTTGGTACTG GCCAGTACGC CACAACAAAA GGCATCTCTC
1501AGACCAACTT GATCACCACT GTGACTCCGG AGAAGAAGGC TGAGGAGGAG CGGGACGAGG
1561AAGAGGACAA ACGGAGGAAG GGGGAAGAAG TCACGCCCAT CTCGGCCATC CGGCACGAGG
1621GAAAGACTGA CAGTGAGCGC ACGGACACCG CAGCCGACGG GGAGACCACC GCCACTGAGG
1681AGCTAGAAAA AACTCAAGAT GACCTGATGA AACATCAAAC CAACATTAGC GAGCTGAAAA
1741GAACCTTCTT AGAAACCTCA ACAGACACTG CCGTAACGAA TGAATGGGAG AAGAGGCTTT
1801CCACCTCCCC CGTGCGACTG GCCGCCAGGC AGGAGGATGC CCCCATGATC GAACCACTTG
1861TCCCTGAAGA GAAAATGGAA ACCAAGACGG AGTCCAGTGG AATAGAGACG GAACCCACCG
1921TGCACCACCT GCCGCTTAGC ACTGAGAAGG TGGTGCAGGA GACCGTGTTG GTGGAGGAGC
1981GGCGTGTGGT GCACGCGAGT GGGGATGCTT CTTACTCGGC GGGAGACAGC GGGGATGCTG
2041CAGCACAGCC CGCATTCACA GGCATTAAAG GGAAAGAGGG CTCTGCCTTG ACGGAGGGGG
2101CTAAAGAGGA AGGAGGGGAG GAGGTCGCTA AAGCTGTCCT GGAACAGGAA GAGACAGCCG
2161CTGCTTCCCG TGAGCGACAA GAGGAGCAGA GTGCAGCCAT CCACATTTCA GAAACTTTGG
2221AACAAAAACC TCATTTTGAG TCCTCAACGG TGAAGACGGA AACCATCAGT TTTGGCAGTG
2281TTTCACCGGG AGGAGTAAAG CTAGAAATTT CCACGAAGGA AGTGCCAGTA GTTCACACCG
2341AAACCAAAAC CATCACATAT GAATCATCAC AGGTCGATCC AGGCACAGAT CTGGAGCCAG
2401GCGTGCTGAT GAGTGCACAG ACGATCACAT CTGAAACCAC CAGTACCACC ACCACTACGC
2461ACATCACCAA AACTGTGAAA GGGGGCATTT CAGAGACAAG AATTGAGAAG CGAATAGTCA
2521TCACGGGGGA TGCAGACATT GACCATGACC AGGCGCTGGC TCAGGCAATT AAAGAGGCCA
2581AAGAGCAGCA CCCTGACATG TCAGTGACCA AAGTAGTGGT CCATAAAGAG ACAGAGATCA
2641CACCAGAAGA TGGAGAGGAT TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2701attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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